Report for 3186.m00145

 > 3186.m00145, length: 927, copies: 1 

MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVD

EVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASP

GYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEY

YDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSR

ALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGL

PLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRK

MLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYY

EYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPD

AVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHG

VCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQ

LNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELL

IFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLN

RCSRLKHIQWWYSTHDQPLTKKCTSLN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	161	467	3.4e-78
NB-ARC [Pfam ls]	161	467	9.4e-79
LRR [Pfam ls]	630	652	2.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	584	606	2.5
LRR [sensitive, ls]	584	606	58
LRR [sensitive, ls]	607	629	0.25
LRR [sensitive, ls]	607	629	5.7
LRR [sensitive, ls]	630	652	0.12
LRR [sensitive, ls]	630	652	2.9
LRR [sensitive, ls]	810	836	3.4
LRR [sensitive, ls]	810	836	79
LRR [sensitive, ls]	858	881	0.52
LRR [sensitive, ls]	858	881	12

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	22	908	1e-114
Pi-ta [Oryza sativa]	24	713	1e-42
Mla1 [Hordeum vulgare].	48	715	7e-59
Pib [Oryza sativa].	159	672	8e-58
I2 [L. esculentum]	168	668	1e-47
L6 [L. usitatissimum]	175	518	6e-16
M [L. usitatissimum]	175	518	5e-16
Xa1 [Oryza sativa]	192	742	2e-37
RPS2 [A. thaliana]	201	884	3e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3186.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)