Report for 3187.m00080

 > 3187.m00080, length: 678, copies: 1 

MVTLLLAFRLSTLFLLLLLAAGAIAVDPDGAAAPDTAAAPDTEAAALLRLKASLIDPTNALEAWSPSSPSPPCDE

AHRWPRVQCYNGVLIGLRLARLNLSGDFDFAALSRLPGLHSINLIRNNFSGPLPASLAAVRSLRALYLSRNAFSG

PVPGDVFAAMSWLKKLYLDRNNFSGELPAGAIAGAPRLQELHLDHNRIEGRVPSKLPATLRLFNVSHNRLTGVLP

EAVAARFNESAFAGNPGLCGAPGSGAGACAAAAPGPAHSAMPPMSAADYFAVQEETSVFVVMGIIMLVVLLVAGA

MVLMLRQDEGTSTASSGYEHPAIGAPSGNLSVPHAAGAAASAQLVTMEQGGSGGGVGGVGGARKQVAEFVLMSNA

AGEFGLPELMKASAEVLGNGTLGSAYKAAMRNGVTVAVKRMRDMNRVGRAEFEEHIRMLGELRTPTSSPPSATIT

ARKKSSSSPSDQSPDRVVLDWPARMRIAVGVVRGLSYLHEKLGIPAMRLVSMTGADFDAPPPPPPHGNLKSGNIL

LDAHLEPRIVDYGFFPLVNTSQAPHAMFAFRSPEAASAAGAGAGAAAQRAALSARSDVYCLGIVLLELVTGKFPS

QYLLTARGGTDVVQWAASAVAGGTEQEVVDPVVAAGAGPAAVRLLRVGVRCTIPEPESRPSMADVARMVEQVAGG

GAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	137	161	0.2
LRR [Pfam ls]	187	207	0.11
LRR [Pfam ls]	209	233	4.8
Ser/Thr pkinase [Pfam ls]	390	669	5.4e-07
Ser/Thr pkinase [Pfam fs]	578	599	0.0041

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	113	136	1.7
LRR [sensitive, ls]	113	136	39
LRR [sensitive, ls]	137	161	0.0087
LRR [sensitive, ls]	137	161	0.2
LRR [sensitive, ls]	162	186	0.52
LRR [sensitive, ls]	162	186	12
LRR [sensitive, ls]	187	207	0.0048
LRR [sensitive, ls]	187	207	0.11
LRR [sensitive, ls]	209	233	0.21
LRR [sensitive, ls]	209	233	4.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	43	224	5e-14
Cf-9 [L. pimpinellifolium]	92	228	3e-11
FLS2 [A.thaliana]	108	246	1e-15
Rpg1 [Hordeum vulgare]	391	597	2e-14
Pto [L. esculentum]	392	670	7e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	4	26	out -> in
putative TM domain	283	305	in -> out

Report for 3187.m00080

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)