Report for 3220.m00122

 > 3220.m00122, length: 1061, copies: 1 

MDVAADLQRVIDILSSARMESQSRLLELDALLGAVRDSIARFPNIINNIIDRRDKCLVLATCGDYDRRLEEARRL

FAHLRGELEAILSRQVEPDSWYQVTALHISNLFFRRATVRELRSLLKKLAGLEESLASVPESGESMDEDLYPVGT

STNDVGPDDYVKSPMVGRSELAEKMLGRMLLADGEEEEGDGPLVLPIVGGPGMGKTYLARFLFNDDRVKQAFQVR

HWVHLSPHFDLSEGVSTITSSWLVDRKDGPSYLQQVISSVLRGGAKYLVVLDNVWNVGQHDWPEWDNLMLAFPPN

GRILLTTRTPSIIPRTAVVMRTTEAYFLQPLDQESSKHVMDMYLPPYHEYGIKLVEKCAGVPLLLEYTSFLILQR

DQLTLIRWKRVLEGSWRIQQEEELTDVFQRAYASYQHLSSELRNCFLFCSLFPLDFNFTAEELADLFAAKGFIPS

TVPEAQRIRFLQQFLDECFYPVEEYDHGGRHMYRMHKILHIFVQYADRVSSSIIRVGQFNAVQDIILSTRSASLL

VHPSTESLPICMSQLKMLKTFILLQEGKTCSSDRQCEIKQIPQELCQTLRHLEVLSLEATKIRKLPNKFDLLFHL

TFLNLSGTDIRVIPSSISKLQLLHTLKLSYCGKLQKLHRNICRLSRLHKLDLEGCRYLSELPQNISKINSLEYLS

VLGCASLTRMPHRFGNLKNLQTLLGYVVSNSNVVMLSELQPLANLHRLSLERLENVLDLKDARDAMLQDKLELES

LALRWNMDTEHANTAAYELIEILRPPQQLKELELVAYEGDKLPSWMTHTEPYLKSLVEIRLINLTECKSLPPLGI

LPRMRIAEISGAESITCIDNNFYGHNGTFPSLEKLTFSYMHNLELWEQADRTGAFPCLAEVEIIHCPKLSALHME

LPSVEKLTLWMNNKMLYGSKGGLRSVARNLEQISICFGEELESSSNFEGLQDLARLKKLNICGCHELTCLPQGLQ

HISSIRSLAIDNCNKLETLPEWLEHQPSLQVIRLSGCPALHSISEGLLRGNSIEIHMNDCPNLTEQSSGILTLQY

IFQRVKCTSGS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	154	453	5.3e-19
NB-ARC [Pfam fs]	186	308	1.5e-09
NB-ARC [Pfam fs]	336	453	1.2e-12
LRR [Pfam ls]	576	598	4.4
LRR [Pfam ls]	599	621	0.032
LRR [Pfam ls]	646	669	3.6
LRR [Pfam ls]	955	978	4.8
LRR [Pfam ls]	1003	1027	0.27

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	576	598	0.4
LRR [sensitive, ls]	576	598	4.4
LRR [sensitive, ls]	599	621	0.003
LRR [sensitive, ls]	599	621	0.032
LRR [sensitive, ls]	622	645	1
LRR [sensitive, ls]	622	645	11
LRR [sensitive, ls]	646	669	0.33
LRR [sensitive, ls]	646	669	3.6
LRR [sensitive, ls]	670	693	0.89
LRR [sensitive, ls]	670	693	9.7
LRR [sensitive, ls]	955	978	0.43
LRR [sensitive, ls]	955	978	4.8
LRR [sensitive, ls]	979	1002	0.73
LRR [sensitive, ls]	979	1002	8
LRR [sensitive, ls]	1003	1027	0.024
LRR [sensitive, ls]	1003	1027	0.27

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	108	729	9e-22
I2 [L. esculentum]	116	1039	1e-71
RPS2 [A. thaliana]	120	937	1e-21
Xa1 [Oryza sativa]	127	1048	3e-41
RPM1 [A. thaliana]	160	737	1e-27
N [N. glutinosa]	190	847	4e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	64	84
putative coiled-coil	114	134

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3220.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)