Report for 3220.m00124

 > 3220.m00124, length: 1118, copies: 1 

MSELEVYSLLQKMAAMRDGGDWPAGAELELQELYTVLEKVQRKMAHAEPLVVVDSGNSARAAYSLFLADLRRVTF

TVDQALDSYSASARRSPFMHRVRSVALMGMAAYGVFAFLSARSSSLLQEKLLPQPLELRPKIARKLEEAVKDVRM

LLRLFSTYVADLLPPPEHQQPEPGLGADPDDTWSLADQKEANLLVKGREQDRCKVRQILEHPGTKVVVIVGMAGA

GKTKLTRHLLCEMCSATTHGFNYSLWVTVSQDFNPEWIYRQVMSKLSDQLKAGEDAESFWWSLNSDLNEGLINKK

HLLVLDGVWNEDPRKWKELMDLLYGNCTQKTKIIVTTRIPAAAAAISSAVIYHLHPFSVEHTLEMLQTINGELPE

KLLGGGSSNATVSTAAAKELSKRKVAEKCSGLPTIIKFLSSSLESICANEVADPLKQFDMMCAGNQGLLHIAEAS

YNHLPPHLKRCFLYCSLFPYHHIFDTDEMISLMVAEGLTQTTSREAQVDGDISRLQSECFDLVNNPGSNGGIRRG

CMMHRVLHILARHKGQELYKAIVGDHSAALKEHSNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSG

QKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVEMLSNLRYLNLSQTDIDKLPESIGRLQYLVSLNISQTCI

ATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLEGCYYLSEMP

QDISNLKNVKELNVLECPSLDKMPCGLSALTKIEALPRYIATSGDNNPILELRDLVKLKRLGLENIANISNEDAE

KIQLQKKHELEHLTLNCNMDAENRKSSSEVKELLDCLEPNPGLKILEIISYAGETFPCWMANTNPQLKKLTQIRI

IRLINLKCSSLPPLGQLHQLETLEISGMNAIKNVSSELHGELNADTFRSLKKIVFSHMVNLQCWPVENGAICEHL

KELSIIQCPKFHKLSMNLNIEKLTLLMSPHELLGREGLAGVARSLKSLSISLCEELSASSNCEGLTMLSNLEELK

ISGCDELENLPPGMENLTALKRLSVIGCQKFQNLTDLLECTALSSLVISDCPMLPSVPQGLRGITTCE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	177	494	9.7e-14
NB-ARC [Pfam fs]	212	338	8e-07
NB-ARC [Pfam fs]	398	494	4.4e-13
LRR [Pfam ls]	641	663	0.094
LRR [Pfam ls]	687	709	0.064
LRR [Pfam ls]	710	733	3.4
LRR [Pfam ls]	734	757	0.037
LRR [Pfam ls]	1045	1068	0.061

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	618	640	1.4
LRR [sensitive, ls]	618	640	16
LRR [sensitive, ls]	641	663	0.0086
LRR [sensitive, ls]	641	663	0.094
LRR [sensitive, ls]	664	686	3.9
LRR [sensitive, ls]	664	686	43
LRR [sensitive, ls]	687	709	0.0058
LRR [sensitive, ls]	687	709	0.064
LRR [sensitive, ls]	710	733	0.31
LRR [sensitive, ls]	710	733	3.4
LRR [sensitive, ls]	734	757	0.0034
LRR [sensitive, ls]	734	757	0.037
LRR [sensitive, ls]	897	918	3.8
LRR [sensitive, ls]	897	918	41
LRR [sensitive, ls]	919	951	0.73
LRR [sensitive, ls]	919	951	8
LRR [sensitive, ls]	1019	1041	5.2
LRR [sensitive, ls]	1019	1041	57
LRR [sensitive, ls]	1045	1068	0.0056
LRR [sensitive, ls]	1045	1068	0.061
LRR [sensitive, ls]	1092	1115	3.4
LRR [sensitive, ls]	1092	1115	37

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	39	1107	9e-39
RPM1 [A. thaliana]	63	772	1e-34
Mla1 [Hordeum vulgare].	132	764	1e-22
Pib [Oryza sativa].	184	996	1e-19
Pi-ta [Oryza sativa]	212	796	1e-13
I2 [L. esculentum]	216	1082	1e-59
RPS2 [A. thaliana]	216	946	6e-26
N [N. glutinosa]	574	751	3e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	24	48

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3220.m00124

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)