Report for 3220.m00127

 > 3220.m00127, length: 935, copies: 1 

MAETAIYLALRKIGIALGRERSATALEHDLEGRSALEHGLEGGSFLIRSLTRVISEIINSNDILVLRQAELQGRL

RRIESELRMILCFLAQIETRYDNKQVLQSWIGEARKLGCLVEQIMDEYIVYIVQSKQYRLTKRVQVILASHRFTA

QLKEIEVELEHLSKMKKRWVQVDKETSLASSSSMFGPHVNNIDTKRYAERKEELIESLKSKDMTKDGALSVIAVY

GQPGSGKTHLVKDVYASEKKYFSTSAWISIAQCPNADTDALKRMMMEELGRQVGTSTESTSLRVMTENQDSKFLF

VFDDVWVPDMVHKVHRAASDNKMGSRIIIIARMPEVAFVRSESSVESQSQTPSSSLEPVRPSARVPKEFMKLTCL

HPNDSFDIFCTKAFGRPSDCPIELREVTLKIIGLCNFLPQAIVSIGALLSSKQKTESVWSEMAQQIEDIQKSKSS

LNNVQKVLYLSYKNLPMHLKNCLLYCSTFPAGFLLLPESLVRLWAAEGFIENQGSLQVEEIGERYIKELIHWGFL

QVVDVDEQGRVASCRMPIVVHELAVSISQKEEFGAICHGGKLAEMDTNVRCLFISENPEDIGALVDFPYLRTLMA

SRNAAANLKSLPASLTAKLKYLTVLKLQESPLEELPRGIGYQLFNLRYLGLRKSQIRCLPSSMANLYNLQTLDLR

GSRINELPSWIGKLIRLRHLSADTLDGQGPDIYRAVKAPKTVNYLKELRTLETVQASDTFEKHVEKLTQLTTLSV

VIGEGRSSKTLFSSLSKLSCLSSLHVSASRVDEESLDFETLNPTSLEKLVIRGGLAEQTFQYPIFKSKQIKVLEL

SLCKLRDDSLVLLSTNLCNLESLRLHNISGISKLVFQAINSFANLRTLLLHEIDGVDELEIPNGSLGSLQVLHVV

KISQLNSIHDQERIISVRDLYFPQLWLSREKRNAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	177	505	1e-28
NB-ARC [Pfam fs]	368	505	9.5e-31
LRR [Pfam ls]	668	690	0.13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	620	6.1
LRR [sensitive, ls]	594	620	66
LRR [sensitive, ls]	621	644	2.3
LRR [sensitive, ls]	621	644	25
LRR [sensitive, ls]	645	667	1.1
LRR [sensitive, ls]	645	667	12
LRR [sensitive, ls]	668	690	0.012
LRR [sensitive, ls]	668	690	0.13
LRR [sensitive, ls]	844	868	2.4
LRR [sensitive, ls]	844	868	26
LRR [sensitive, ls]	869	895	6.6
LRR [sensitive, ls]	869	895	72

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	36	726	2e-37
RPM1 [A. thaliana]	52	921	3e-66
Mla1 [Hordeum vulgare].	105	791	3e-38
Xa1 [Oryza sativa]	176	799	1e-24
RPS2 [A. thaliana]	213	908	1e-22
Pib [Oryza sativa].	219	697	1e-25
Pi-ta [Oryza sativa]	219	788	1e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3220.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)