Report for 3222.m00176

 > 3222.m00176, length: 997, copies: 1 

MQLSGGEQHLIIITRNRELGSSEPSGMEFATGAMGTLFPKLAELLKEEYDLQNSVKEGITFLMAELQSIQAALEK

ISKVPLDQLDKQTKIWAWDIRELSYDIEDNIDMFMVRVDGLEPAKKHNFTWLIDKCHESLSKIKIRHKIANEIKD

IKSQVKEVMERRDRYKIDDVATNLPTYVDPRILTLYENVTKLVGIDKASDDLMRRLSVGDEAPKKLKMVSVVGIG

GLGKTTLSKVVFDMLKLQFDCAAFVPVGQDHEIKKVLKDILVELNKDKYMSFDVTGVSERHMINELREYLDNRRY

LIVIDDIWEPSKWNIIKLALIDSSCGSRVITTTRIRQVANEVAKEFGDVYMMEPLSDDNSKTLFYNRIFGVACNG

PTDNQSVEATEKILKRCGGIPLSIITIASLLVDKPAREWSVIYDSISFGTGDQNEAVQNMRKILSFSYYHLPSYL

KTCMLYLSIYPEDHLIYKDILIWKWIAEGFVHEEQDKGLFEVGERYFIELINKSMIQPIEEFCNVSGCRIHDMVL

DLIRKIATEGNFVKVFDKLHEMHGLSSQRTTIRRIALHKSWNQGKNNDLAVGMTHLRSFNAINCNINMMPSLLSF

HVLRVLDLDDCNVTGGLYLKHIGKLRQLRYLGMKNTSVAELPTEIGDLVNLQALDVWEIGLRELPSTICKLSKLM

RLCVFGITTVPMGFGNLSSLQYLELAEGSIKSIADIAMEVGKLMELKILSISLDKFDEGTEKALLQSLCGLRRLR

NLRIDFWLCESTMIWQGWDHWEPPPQLREFCIFDVELARLPAWVNSMCVPYLSELRLDVVAMEARDLDMLARMPA

LRTLCLRTQARFSWTVGGAGLFPNLRFCRMDIALAFLQGAMPMLTQIELYLWASEYCAATDVGLGHLLLLNRVEV

ILDCCDATTRQVEEEEAAWRRMYQMKGNEDNDEGEISAKDHVDGNSDDEISAHMDQELDSDAAKEEKEEEILRTN

LELALCTHSVMLSAAAAGQEED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	177	486	9.5e-54
NB-ARC [Pfam ls]	177	486	1.2e-53

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	580	601	7.3
LRR [sensitive, ls]	580	601	80
LRR [sensitive, ls]	602	626	0.66
LRR [sensitive, ls]	602	626	7.2
LRR [sensitive, ls]	627	649	2.9
LRR [sensitive, ls]	627	649	31
LRR [sensitive, ls]	650	672	2.5
LRR [sensitive, ls]	650	672	27
LRR [sensitive, ls]	694	714	4.7
LRR [sensitive, ls]	694	714	52

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	26	698	4e-39
Mla1 [Hordeum vulgare].	27	950	1e-166
Pi-ta [Oryza sativa]	51	724	6e-70
Pib [Oryza sativa].	86	367	6e-13
RPM1 [A. thaliana]	96	754	3e-56
RPS2 [A. thaliana]	142	674	2e-24
L6 [L. usitatissimum]	168	531	5e-12
M [L. usitatissimum]	168	414	4e-13
Pib [Oryza sativa].	190	674	4e-51
Xa1 [Oryza sativa]	216	757	1e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	146	166
putative coiled-coil	956	977

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3222.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)