Report for 3222.m00179

 > 3222.m00179, length: 1001, copies: 1 

MEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYD

IEDNIDTFMICVDGLEPAKKHNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPT

FVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVP

VGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRRYLIVIDDVWETSKWNIIKCALIDSNRG

SRVIITTRIYQVANEAAEEFGGVYMMEPLSDDNSKKLFYNRIFGVACSSSTGNQSVEATKKILHKCGGIPLSIIA

IASLLVDKPTGDWSIIYDSIGFGTGDRNEAVQNTRKILSFSYYHLPSYLKTCMLYLSIYPEDHLIKKDTLIWKWV

AEGFVQEEQDKPLFEVGERYFIELINRSMIQPMENDGKISGCHIHDMVLDLIRNIIAEENFVKVFDKLHEVHRLS

SQRSTVRRIALHESWNQGKNNDLAVGMTQLRSFNAIKCTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLR

QLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTGVLMGGWNLSSLQYLKMG

YGCIKSNKDFAIEVGKLMELRILKIYVENKFDKGTKNALLQSLCCLRRLQNLMIDFPLPFQNTMSIWDGWDLWEP

SPQLRVFRICGIELPRLPEWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALRTLCLRTQARFSWTVGGAGLFP

NLRFCRMDIALTFLQGAMPMLMKLQLWLWASEYCAATDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMV

NSHPNRPAIRVSRLEEFISLSHFVFQYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQEELCLLSWRLVSEEQ

ETESFLPLTCCTDRLNILEIETCSVS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	151	460	6.9e-55
NB-ARC [Pfam fs]	166	460	4.4e-55
LRR [Pfam ls]	624	646	0.62

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	576	600	0.85
LRR [sensitive, ls]	576	600	9.3
LRR [sensitive, ls]	601	623	1.3
LRR [sensitive, ls]	601	623	14
LRR [sensitive, ls]	624	646	0.056
LRR [sensitive, ls]	624	646	0.62

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	911	1e-158
Pi-ta [Oryza sativa]	25	645	3e-72
Pib [Oryza sativa].	63	412	2e-14
RPM1 [A. thaliana]	70	774	1e-55
RPS2 [A. thaliana]	116	668	3e-25
I2 [L. esculentum]	158	809	2e-38
Pib [Oryza sativa].	164	648	1e-56
L6 [L. usitatissimum]	165	752	5e-16
M [L. usitatissimum]	165	699	5e-17
Xa1 [Oryza sativa]	190	651	3e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	120	140

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3222.m00179

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)