Report for 3222.m00188

 > 3222.m00188, length: 413, copies: 1 

MLKEEYDLQKNVKEGIKFLKAELESMQAALEDVSKVPLDQLAKPIKIWARDIRELSYNIEDNIDTFMLRVDSLEP

SKKNKFTWLIDECKKSLSKVKIRHKIANDIKDVKSQVKMVMECRDRYNINNVIARLPTTVDPRILTLYEKATKLI

GIEKASNDLIKRLSVEGEASKKLKMKPNIKNVIKGILIDLNKHKYMEFDSAILSERHLIDELREYLGNRRYTLDH

FTNPYHFYSLVDINMEIIKCALIDSNCRSRVIATTRISQVAKEVAEEFGDIYIMEPLSEDNSKKLFYSRMFGVNH

KDAADNQSIEVTKNILKKCGGVPLSITTIASLLIDKPMGEWSTVYDSIGFGPTDENEVVQNTRKILSFSYYDMPS

HLKTCMLYLSIYPEDHWIEKDSLIWKWIAEGFIHEEQG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	134	413	3.8e-12
NB-ARC [Pfam fs]	243	413	2.7e-26

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	413	3e-21
Mla1 [Hordeum vulgare].	1	411	6e-76
I2 [L. esculentum]	16	408	2e-13
Pi-ta [Oryza sativa]	176	409	3e-24
RPS2 [A. thaliana]	237	413	5e-11
Pib [Oryza sativa].	254	407	6e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	10	36

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3222.m00188

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)