Report for 3222.m00189

 > 3222.m00189, length: 922, copies: 1 

MEFTTGTMGTLLPKLGKLLKEEYNLRKSVKEGIIFLKAELESIQAVLEKVSMVPLDQLDTQIKFWARDVRDISYD

IEDTIDTFMLHVNGLEPTNTTSHVKIHHKIANDIKYLKRQIKEVMDRRDRYKIDDIVAKPRTVIDPHLLALYEKA

TNLIGVDKPADDLIKMLSIGDEISRNLKMVSIVGFGGLGKTTLAKVVFDMLKGQFDCAGFVPVGQRPDIKRVFKD

ILIEVNKHKYMVFDALALNERHLIDELREYLDNRSPFHSHADRYLIIIDDIWETSTWKIIKCAFLDSNSGSRVIA

TARISQVAKEIAKEFGYVYIMKPLSINNSKKLFYSRIFGADYNGPSNNQPAEVTEKILKKCGGVPLSIITMASLL

VHKPLEDWSDVYESIGFGSTDQNEVVHNTRKILSFSYYDLPLYLKTCMLHLSIYPEDHLIEKDCLIWKWVAEGFI

REEQGKGLFETRERYFIELINKSMIQPTEQTLFGCKVDGCRVHDMMLDLIRILATEENFLKVLHRGHEQQSPSLH

SKTIRRLALHKSRNQDNFAIGMEQLRLFNAIECPINMTSPLVNSHVLRVLALENCVVMGGCLKHLRKLLQLRYLG

LRYTRIDELPSEIGDLMHLQTLDIMNTGLEALPATIGKLTKLMRLRVDNGTRVHAGVANLTSLQELLLGKISDDT

CPNFAVELCTLTDLRVLNIWIKMEDEGTLNTLVESLQSLRRIQNLNIRLDIKDTGMETKYSMMCIWEDWEPPRQL

REFYLSGWTGFLPRLPAWMNSKRIPNLSKLDMKVLAMEPWDLDTLGRMPMLHYLRRRICTKISSWTVGCGLFPNL

RYCMMNIELKFLQGVMPMLMEIEFYVSASSLGVPNDVGLGNLPLLNCAHISLECKGATGRQVEEAEIELRRYHPN

RPAIYVFRLDEVRLVLLVIMII

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	138	455	2.5e-45
NB-ARC [Pfam ls]	138	455	7.6e-45
LRR [Pfam ls]	618	640	3.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	595	617	0.51
LRR [sensitive, ls]	595	617	5.6
LRR [sensitive, ls]	618	640	0.32
LRR [sensitive, ls]	618	640	3.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	804	1e-54
Mla1 [Hordeum vulgare].	1	906	1e-142
Pi-ta [Oryza sativa]	24	623	2e-64
I2 [L. esculentum]	36	878	7e-38
N [N. glutinosa]	52	388	1e-11
Pib [Oryza sativa].	62	336	3e-13
Pib [Oryza sativa].	76	651	6e-52
RPS2 [A. thaliana]	103	695	3e-20
M [L. usitatissimum]	153	429	4e-12
Xa1 [Oryza sativa]	162	666	3e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3222.m00189

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)