Report for 3222.m00194

 > 3222.m00194, length: 967, copies: 1 

MELATGAIGAVLPKLGKLLKEEYDLHNSVKEGIKFLKAELEYMQPALKKVSNVPRDQLDEQVKIWAKDVRELSYS

IEDIIDTFMLQVDALEPPKNNIFTWLINKCHKLSQLMIHHKIGNDIKSVENQVKEVTERYDRYRIDSIDAKPPIF

IDPRILGLYEKVTNLVGVDKASEDLIRMLFVGSDASKMLKIVSVLGLGGLGKTTLAKFVFDNLKVQFQCFAFISV

GQKPADIKNVLKHILIGLDKHKYMELDTSQLSESYLTDEVREYLDNKRCGPWTTVPPSLLRHCFEVIWYLIVIDD

VWEIFTWKRINCALVDSNCGSKVITTTRISEVAEVVGDVYRMKPLSSDNSKRLFNNRIFGIGSNGPTNNQSVEAT

EKILKKCNGMPLSIVTMASLLVNKPVEDWIEVYDSIGFGPTGQNQEVENMRKILSFSYYELPSYLKTCLLYLSIY

PEDHRIMKKPLIWKWIAEGFVQEEQQTWLFEVGERYFTELVNRSMIQPIEMYGRVFACRIHDMVLDLIRILATEE

NFVKILDRLYDVHSSSSQSSTARRVAWHKSLNQDKFDNLTTGMAQLRSLNAIECPISMIPPLVSFEILHVLALES

CGVITGYHLKHIGKLQRLRYLGLRGTRITELPSEIGDLMHLLVLDVRGTNALPATVGKLRRLIRLCVGGTIVPSG

VIGNLTSLQDLRLGEITDDGCPNIAVDLCKLTDLRKLTIDWLHLDEGSLKTLVESLCTLRKLQSIKIKGSWKVLE

GWEGWEPPRQFRKFYVDGSLPRRPTWVDSVRIPHLSHLNLHLLAVEQRDLDALAMMPELRVLEVNSDLSISWTIA

GGGLFPSLRCFSTDIEIMFLQGAMPMLTNISFEPSGDDSANDIGLRQVKEAIAVWRRVINSHPNRPITHVQIGDE

AYNLIPSDDSDDEEISDPGKDDINDEEEDQISDPEETDRNYGEEEISATDQKQDNGAADEAKRRRLS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	150	476	1.3e-39
NB-ARC [Pfam fs]	165	227	9e-07
NB-ARC [Pfam fs]	294	476	6.8e-37
LRR [Pfam ls]	617	639	0.54

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	570	591	1.5
LRR [sensitive, ls]	570	591	17
LRR [sensitive, ls]	617	639	0.049
LRR [sensitive, ls]	617	639	0.54
LRR [sensitive, ls]	713	735	4
LRR [sensitive, ls]	713	735	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	914	1e-146
RPM1 [A. thaliana]	3	809	1e-52
Pi-ta [Oryza sativa]	25	652	1e-60
I2 [L. esculentum]	33	670	1e-33
Pib [Oryza sativa].	62	357	1e-10
RPS2 [A. thaliana]	115	743	2e-20
Pib [Oryza sativa].	163	662	3e-50
Xa1 [Oryza sativa]	171	765	3e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	116	141

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3222.m00194

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)