Report for 3230.m00134

 > 3230.m00134, length: 932, copies: 1 

MAESVLLIALGKITAALGADVLQQIRNLLPTEVSLFGQLTGRMNRIKKELFVIHAFLSQADLQGVQTRTVEAWVD

AVRKVALDVEDVIDEYVHLLGQQKCGWFTSVKGKFGRSQHLCLWLQIVERLKEIERDLWHISEMKDRWIHTSTEL

LGRGNLDGDYHCALPYSPQCGYFINSDDMIGFGNYKMLLINWLAQKDSSTSVMVILGMGGIGKTTLASNVYETEK

SRYDCSAWIATSQVYNICSLLRTTIRHCFKNTKEIPPNVDIMDQHSLIVELREFLKGRSCLVVIDDVWDHVCIGT

ILKAFSHNEHRNKIIITTREIQIAKFVDQSYMIQMEKLEESEAWDLFCRKAFLNEKEKSCPEELVGIAKDIMKWC

CGLQLALVTMGGLLSLREKNNSEWKRVYNNLLCSFDNDPGLNHLKHVLNLSYRYLPEYLKDCFLFCSIFLENSMI

KRKHLIRLWIAEGFVEDRAGTTMEELAHDYLSELIRRGMLQVMKRNENGRVKHCRMHCIVREVTISLCKSRGFHM

IWGNKESTSAYEARRFAIHGINQSSSEILTDLPHVRTFLSFDVTMSDTLLSRIVCSSRYLTVLDVSGALFIKEVP

KQVVSLFNLRYLGLRRTKVKKLPSSLGRLANLQTLDLHHSCISRLPSGITKLEKLRHLFVETVKDSSFQSLNACS

GVGAPSGICKLKSLQTLFTIEASKCFVQQANKLVQLKSFRITKVRGSHCSVLSESIKRMKQLVYLDILASDEEEI

LDLDISPPPSTLEKLCLRGKLNDSNLHSFFNSFCNNLTCLFLGWSSLSRDPLPLLSQMTNLAFLWLQRAFDGPQL

RFVLGWFPRLRRLHLKDMDHLHSLEIEEGSVVSLEVLEMTGLNELNDIPGGIFFLNNLQEVYLDSMHKDFINHQS

EGENVEDFPRFIYGHSPNFWRGEDVAYCHQYT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	163	470	1.4e-67
NB-ARC [Pfam ls]	163	470	3.7e-68
LRR [Pfam ls]	608	630	4.9
LRR [Pfam ls]	631	653	0.035

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	608	630	0.24
LRR [sensitive, ls]	608	630	4.9
LRR [sensitive, ls]	631	653	0.0017
LRR [sensitive, ls]	631	653	0.035
LRR [sensitive, ls]	786	809	4
LRR [sensitive, ls]	786	809	81
LRR [sensitive, ls]	858	882	1.4
LRR [sensitive, ls]	858	882	28

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	13	840	3e-56
RPM1 [A. thaliana]	24	888	1e-108
I2 [L. esculentum]	43	692	6e-45
M [L. usitatissimum]	172	444	3e-11
L6 [L. usitatissimum]	174	444	1e-10
RPS2 [A. thaliana]	183	912	2e-37
Pi-ta [Oryza sativa]	189	636	4e-37
Pib [Oryza sativa].	193	888	1e-52
Xa1 [Oryza sativa]	193	720	5e-32

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3230.m00134

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)