Report for 33.m00102

 > 33.m00102, length: 1101, copies: 1 

MARLVLPLLIILVAAAAAIPALANAATPTEAEALLAWKASLQDDAAALSGWSRAAPVCAWRGVACDASAAAGARV

AKLRLQGLGLGGGLDELDFAALPALAELDLNGNNFTGAIPASITRLRSLTSLDLGNNGFSDSIPPQFGDLSGLVD

LRLYNNNLVGAIPHQLSRLPNIIHFDLGANYLTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDL

SQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIPASLGKLMKLQDLRMAGNNLTGGIPEFLGSMPQLRILELGD

NQLGGAIPPVLGRLQMLQRLDIKNSGLVSTLPSQLGNLKNLIFFELSLNRLSGGLPPEFAGMRAMRYFGISTNNL

TGEIPPALFTSWPELIVFQVQNNSLTGKIPSELSKARKLEFLYLFSNNLSGSIPVELGELENLVELDLSENSLTG

PIPSSLGKLKQLTKLALFFNNLTGTIPPEIGNMTALQSFDVNTNRLQGELPATISSLRNLQYLSVFNNYMSGTIP

PDLGKGIALQHVSFTNNSFSGELPRHICDGFALDQLTANYNNFTGTLPLCLKNCTALYRVRLEENHFTGDISEAF

GVHRILQYLDVSGNKLTGELSSDWGQCTNLTYLSINGNSISGNLDSTFCKLSSLQFLDLSNNRFNGELPSCWWEL

QALLFMDISGNDFYGELPATESLELPLQSMHLANNSFSGVFPNIVRKCGALVTLDMGNNKFFGHIPSWIGISLPL

LRILILRSNNFSGEIPTELSQLSELQLLDLASNVLTGFIPTSFGNLSSMTQAKTLPATEYFNAESSPFQPEVPQV

PKPHRRREPKNQSPLDQSRDRVSIQWKGHEETFQRTAMLMTGIDLSGNSLYGEIPKELTYLRGLRFLNLSWNDLS

GSIPERIGNLNILESLDLSWNELSVIEYYPKLAPGVNLTMHLSCEIPTVPDGATGDLESLQRAMAILPVKERPVK

ARVFAAFASGDGDGGGEALGGSRAEVDGAEAVSFAVGGIARAHGMEVELVVGLVCWRGKAWDEAEAELLLRGSAR

RWRAAEQSCRGDSEFGSEFSREREREREREREREREDQARRRSHQGVVSIF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	99	122	0.56
LRR [Pfam ls]	123	146	0.0019
LRR [Pfam ls]	147	170	0.37
LRR [Pfam ls]	219	243	0.036
LRR [Pfam ls]	244	267	0.095
LRR [Pfam ls]	268	291	0.058
LRR [Pfam ls]	292	315	0.092
LRR [Pfam ls]	340	363	1.6
LRR [Pfam ls]	413	436	0.11
LRR [Pfam fs]	437	460	2.9e-05
LRR [Pfam ls]	437	460	0.00049
LRR [Pfam ls]	461	484	0.091
LRR [Pfam ls]	509	529	3.6
LRR [Pfam ls]	605	628	0.63
LRR [Pfam ls]	629	652	0.059
LRR [Pfam ls]	653	676	0.15
LRR [Pfam ls]	750	773	2.2
LRR [Pfam ls]	774	797	0.0068
LRR [Pfam ls]	888	911	0.037

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	74	98	1.5
LRR [sensitive, ls]	74	98	34
LRR [sensitive, ls]	99	122	0.024
LRR [sensitive, ls]	99	122	0.56
LRR [sensitive, ls]	123	146	7.9e-05
LRR [sensitive, ls]	123	146	0.0019
LRR [sensitive, ls]	147	170	0.016
LRR [sensitive, ls]	147	170	0.37
LRR [sensitive, ls]	171	194	2
LRR [sensitive, ls]	171	194	47
LRR [sensitive, ls]	219	243	0.0015
LRR [sensitive, ls]	219	243	0.036
LRR [sensitive, ls]	244	267	0.0041
LRR [sensitive, ls]	244	267	0.095
LRR [sensitive, ls]	268	291	0.0025
LRR [sensitive, ls]	268	291	0.058
LRR [sensitive, ls]	292	315	0.0039
LRR [sensitive, ls]	292	315	0.092
LRR [sensitive, ls]	316	339	0.25
LRR [sensitive, ls]	316	339	5.8
LRR [sensitive, ls]	340	363	0.066
LRR [sensitive, ls]	340	363	1.6
LRR [sensitive, ls]	364	388	0.27
LRR [sensitive, ls]	364	388	6.4
LRR [sensitive, ls]	389	412	0.41
LRR [sensitive, ls]	389	412	9.5
LRR [sensitive, ls]	413	436	0.0047
LRR [sensitive, ls]	413	436	0.11
LRR [sensitive, ls]	437	460	2.1e-05
LRR [sensitive, ls]	437	460	0.00049
LRR [sensitive, ls]	461	484	0.0039
LRR [sensitive, ls]	461	484	0.091
LRR [sensitive, ls]	485	508	0.5
LRR [sensitive, ls]	485	508	12
LRR [sensitive, ls]	509	529	0.15
LRR [sensitive, ls]	509	529	3.6
LRR [sensitive, ls]	533	557	0.27
LRR [sensitive, ls]	533	557	6.2
LRR [sensitive, ls]	581	604	1
LRR [sensitive, ls]	581	604	24
LRR [sensitive, ls]	605	628	0.027
LRR [sensitive, ls]	605	628	0.63
LRR [sensitive, ls]	629	652	0.0025
LRR [sensitive, ls]	629	652	0.059
LRR [sensitive, ls]	653	676	0.0062
LRR [sensitive, ls]	653	676	0.15
LRR [sensitive, ls]	677	699	2.3
LRR [sensitive, ls]	677	699	55
LRR [sensitive, ls]	701	724	2
LRR [sensitive, ls]	701	724	46
LRR [sensitive, ls]	725	749	0.51
LRR [sensitive, ls]	725	749	12
LRR [sensitive, ls]	750	773	0.094
LRR [sensitive, ls]	750	773	2.2
LRR [sensitive, ls]	774	797	0.00029
LRR [sensitive, ls]	774	797	0.0068
LRR [sensitive, ls]	864	887	0.53
LRR [sensitive, ls]	864	887	12
LRR [sensitive, ls]	888	911	0.0016
LRR [sensitive, ls]	888	911	0.037
LRR [sensitive, ls]	912	933	1.1
LRR [sensitive, ls]	912	933	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1	596	5e-68
FLS2 [A.thaliana]	21	803	1e-103
CLV2 [A. thaliana]	28	698	2e-62
Cf-9 [L. pimpinellifolium]	51	741	3e-56
FLS2 [A.thaliana]	78	308	5e-30
FLS2 [A.thaliana]	90	587	2e-65
Cf-9 [L. pimpinellifolium]	100	666	1e-44
Cf-9 [L. pimpinellifolium]	217	924	6e-64
CLV2 [A. thaliana]	217	794	3e-58
FLS2 [A.thaliana]	217	924	4e-86
FLS2 [A.thaliana]	219	923	5e-94
Xa21 [O. sativa]	220	741	7e-73
FLS2 [A.thaliana]	278	924	2e-77
CLV2 [A. thaliana]	340	924	1e-54
Xa21 [O. sativa]	370	921	1e-60
FLS2 [A.thaliana]	375	943	6e-66
Xa21 [O. sativa]	461	924	3e-40

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 33.m00102

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)