Report for 3311.m00122

 > 3311.m00122, length: 1032, copies: 1 

MAIVLDAFASYVGDLLKQVAQDELTLLLGVSSEIASLHERLNSLKDYLADAERRRITDQSVQGWVRKLKDVMYDV

TDILDLCHLKAMQRGGVGSSAPPVNISCLDSLLFCLRNPLFAHDIGSRIKALNARLDAICKSAAAFSFLKLEAYE

DMAAPRRPSAADRKTDPVLERSAVVGEKIEEDTRTLVKMLTNGKNKKQNAVVVVAVVGTGGIGKTTLAKKVFNDE

AIKEAFDKKIWLSVTQDVNEVEPLGWPLESNKSLLVPTLVDAIRDKRFFLVLDDVWSDRAWSGLLKVPFSHGAAG

SRVLVTTRHDAVARGMQAMHPFHHVDKLCPPDAWSLLKKQVVSSEMEDVEIDETLKDIGMEIIDKCGGLPLAVKV

MGGLLCQKERRRADWEKILHDSIWSVPQMPDELNYTIYLSYQDLHPCLKQCFLHYSLLPKNVDFFIDTVTSMWIS

EGFLHGETDDLEQLGEECYKELIYRNLIEPNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKSH

KFLRLSIETDDLQPNDEFGWKIIQGQKSLRTLILVGELKINPGDSLITLSSLRTLHIENANCTSTLVESLHQLKH

LRYISLKCGDITRLPENIGKMRFLQYLGLVCENLDRLPNSIVKLGQLSLQELGPLAQLWVLGLSNLENVPAISFA

AKARLGEKAHLSYLMLECSSRLGEDGFVQDENGVPTEEQRQIEEVFNALTPPLCIESIEISGHFGEQLPRWMMSR

VAGAYERLSMVIMDDLACCNQLPDGLCRLPSLYYFQLTHAPATKRVGPEFLTILPSSSQLRQAHAFPRLKRMNLI

GMVEWEEWEWDQQLNSVHAMPALEELVIENCKLRRLPPGLSSQATALTSLYLRNIQQLNSVESFASLVKLEVYDN

PNLESITSLNKLQKLVIDGCLKMRILEGVPELLRLELKDLDMEELPGYLLQSVSPRHLVLDCSLEMLTAISTGES

GPEWSKLSRVQHVKAYADQGDNERRWHVLYTRDPYRFETNIGISSSSSSGESGDDEE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	158	459	7.7e-60
NB-ARC [Pfam ls]	158	459	5e-60
LRR [Pfam ls]	847	870	1.9
LRR [Pfam ls]	891	913	2.8

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	576	599	0.42
LRR [sensitive, ls]	576	599	11
LRR [sensitive, ls]	600	622	0.31
LRR [sensitive, ls]	600	622	8.5
LRR [sensitive, ls]	847	870	0.068
LRR [sensitive, ls]	847	870	1.9
LRR [sensitive, ls]	891	913	0.1
LRR [sensitive, ls]	891	913	2.8
LRR [sensitive, ls]	931	954	2.4
LRR [sensitive, ls]	931	954	66

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	647	3e-40
RPM1 [A. thaliana]	12	894	4e-40
I2 [L. esculentum]	34	932	5e-62
Pi-ta [Oryza sativa]	58	627	5e-27
Xa1 [Oryza sativa]	158	937	5e-48
Pib [Oryza sativa].	170	653	3e-30
N [N. glutinosa]	199	978	9e-13
RPS2 [A. thaliana]	203	629	2e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	32	55

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3311.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)