Report for 3319.m00113

 > 3319.m00113, length: 567, copies: 2 

MGEVQTGVQQQNLIRPLNRCSCAERALNSPEVKATSAVLAHQGYQLLQQKLLISSQMQGGASATILWEWILLGTK

NSNGEAPLFFSTYDHAAVLNLAMDKVVGILRGVAGVAADANAFREFFHWVTPHVLAAVRSQQQQQLLQLDSGGPV

SASTGNNRTAPLHQIQDDLQKLEHNLWVIQTTITSTMHDLIDRLEWHSHRETEARHLRQIKDAVYDAEDLLDEYN

YYALKVKVEASKNLGQDHSHGPVLEFLDSVNFNGNFSKVMEIQDRLKHVFDQSMGLGLHKTPKKFDRLVRPETCR

VLDESQIFGREQELKELMQMLGVDGHKRGRPAAHTNTTEARRMELPVLPIVGMGGVGKTTMAQQICEDPEVRKHF

HHRIIWICVSDEFEVNRLTKDALKSLGVKSEDTDTRDNLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHR

TLSNGLDGSMILVTTRSSKVANLVSDGNHYELKGLQDGVFWNFFKLCAFGSVQSWSNRPELQRIRPELERIGRAI

LPKLKGSPLAAKTLGRLLKCNRSIEHWEDILKRAVAIRTRGD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	290	557	9.9e-37
NB-ARC [Pfam ls]	290	567	4.8e-13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	157	555	1e-18
I2 [L. esculentum]	207	560	2e-44
Mla1 [Hordeum vulgare].	209	557	2e-12
RPS2 [A. thaliana]	298	552	2e-13
Xa1 [Oryza sativa]	298	557	2e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3319.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)