Report for 3319.m00127

 > 3319.m00127, length: 1076, copies: 1 

MDDIVGILKGAAGLAADANAFREFFNWAAPRVLAAVRSQQQQHLLQVDPGGVGSASARDNRTAPLHQIEDDLQNL

ENDLWLIQSTTSTMYDLIDRLEWHSHKDTEDWHLRQIKDVAYDAEDLLDEYNYYALKVKVDTSKNLGQDHSHEPF

LEFLNSVNFSKVMKIKNRLKQVFDQSKGLGFHKTPKKFDRLVRPETCRVLDEPDEIFGREKELKELKQKLGVRGR

KRGRPVACSTTAEARRTELPVLPIVGMGGIGKTTMAQQICEDRVVRNHFDCILWICVSDEFEVNRLTRDVLKSLG

VKSQDSDTRDTLMVNLRDSVKSKKFLLVLDDMWDDVLKDERGWRTFHRTLSNGLQGSMILVTTRSSKVANLVSNS

DPYELNGLQNDVFWDFFKLCAFGSNSSRNSPELEHIRPELERIGRAILPKLKGSPLAAKTLGRLLKSNLSVEHWE

DILRSELWKLEQEETDILPALRLSYVYLPRHMKRCFSICALYPKDHKFDKEFLADIWVAQGYVEAEDASSCFNDL

VNRSFFQKAAGYSDMYVIHDLIHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTKGNISCTEIVTICTQNKK

LRSLICNESYRSIKQFAPVIDCWFKELPSIRVLIFKFSTVRKLPESIGNSKHLRYLGLLGSSTFETLPSSVSCLY

HVQTINAKGCVFKRYPQGFSDLISLNKIESKGFQFNKVKDKQFLEWSTTEIADEQLQMTEEQIELLPHWNLEHLI

IKNYLGQSCPSWLQPDCLKVLTSLELYGCRNIQSLSFFDPLFSDLEESNSIYHLEVLDVHQCPNIDWQGLVALPS

SLRRVTLGNFGHSTDHFVSCFRGLSLLTHLEIHCWFLTSIPLQVWMSNLPSLENLRIDNCGSLTSICVSEASNIH

TVGVFSSLSTVTISFCNALLSLDEFFMPAYMPFVKTIDVLFCKELALLPVHELHLFSRLEKLCIRNCPKLNMQRR

MTLPSSLRMLSLLLCPSIEYIDNSHLASAMKLKGLSLQLMRCPDLISIVGAISVSEIVQGRIEDCPKLMEITQPF

KVMTESQKKVQPDQTMGRLGDENLKN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	188	518	3e-65
NB-ARC [Pfam ls]	188	518	1.1e-65

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	629	651	2.1
LRR [sensitive, ls]	629	651	57
LRR [sensitive, ls]	770	792	0.19
LRR [sensitive, ls]	770	792	5
LRR [sensitive, ls]	803	831	1.9
LRR [sensitive, ls]	803	831	52
LRR [sensitive, ls]	876	900	1.5
LRR [sensitive, ls]	876	900	41
LRR [sensitive, ls]	958	986	4
LRR [sensitive, ls]	958	986	110

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	32	682	5e-21
RPM1 [A. thaliana]	51	872	4e-43
I2 [L. esculentum]	100	973	2e-89
Mla1 [Hordeum vulgare].	111	681	1e-35
Pib [Oryza sativa].	174	704	4e-26
Xa1 [Oryza sativa]	196	681	3e-73
RPS2 [A. thaliana]	243	952	9e-27
N [N. glutinosa]	246	955	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3319.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)