Report for 3322.m00089

 > 3322.m00089, length: 349, copies: 1 

MVRAIGPLLLLAHVLVFVVSIAAAAAPVRRPRCDAGDRAALLAVKAAFNNASYFQSWTPDIACCHWYGVDCGGDD

YDYDPTDGDRVLSLAIIRDDNVTGGIPGDAIARLTRLQELMFFKVPGVTGPIPAALATLTALRELTISRTALSGS

IPSFIGDKFTALQSLDLSFNSLTGAIPASLAKPPKLISIDLSRNQLTGSIPRLLLSKAGQQAFLTLSHNNLSGRI

PAAFGAVNFVQIDLSRNQLTGDASMLFGSGKKELGSVYLSRNALSFDMSELRLPERLSFLDVSHNAIRGGIPAQV

ANLSNLQLLNVSYNRMCGEVPTGGNMARFDAYCFQHNKCLCGAPLAACH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	161	184	0.098
LRR [Pfam ls]	185	209	0.36
LRR [Pfam ls]	281	304	0.31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	136	160	0.43
LRR [sensitive, ls]	136	160	12
LRR [sensitive, ls]	161	184	0.0036
LRR [sensitive, ls]	161	184	0.098
LRR [sensitive, ls]	185	209	0.013
LRR [sensitive, ls]	185	209	0.36
LRR [sensitive, ls]	233	256	0.76
LRR [sensitive, ls]	233	256	21
LRR [sensitive, ls]	281	304	0.012
LRR [sensitive, ls]	281	304	0.31
LRR [sensitive, ls]	305	327	0.49
LRR [sensitive, ls]	305	327	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	16	321	8e-22
Xa21 [O. sativa]	35	345	1e-17
Xa21 [O. sativa]	63	342	2e-29
FLS2 [A.thaliana]	64	322	1e-24
Xa21 [O. sativa]	79	321	2e-12
FLS2 [A.thaliana]	80	323	2e-20
FLS2 [A.thaliana]	85	348	3e-23
CLV2 [A. thaliana]	89	337	9e-18
CLV2 [A. thaliana]	91	329	1e-12
Cf-9 [L. pimpinellifolium]	92	329	4e-13
FLS2 [A.thaliana]	94	321	2e-20
Cf-9 [L. pimpinellifolium]	96	328	4e-13
CLV2 [A. thaliana]	122	329	7e-19
CLV2 [A. thaliana]	124	320	1e-18
FLS2 [A.thaliana]	124	321	6e-15
Xa21 [O. sativa]	130	346	4e-14
CLV2 [A. thaliana]	140	322	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 3322.m00089

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)