Report for 3328.m00119

 > 3328.m00119, length: 1523, copies: 1 

MVAGWSCERRRSAGKAAPGAGRQRRRAQGDNGVERGPRRWLDLAPGNSVVGSGWHRASNMVGQGHSGQCGAVGIG

GRSRTEGGWREADLARVGMVGAVGSRHDDGGGSGVPSGVTSIPVSQKSTNPFQGLDLAGERQGQQSCASLLLQAK

RRRRIWGGRAFLAVYDRLVPDPQFASMELATGAMRSLLPKLLQLLEKEYGLQTGIGDVPSEQVDELVKLWARDVR

EASYEMEDIVDTFLVHDDGPDPTDPHMLLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQVKARHVKYTVDSVV

LKSLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTTLAKAVYDHFK

PHFKCRASVPVDQNPDMNKAFDDQVEPHFECGAFVPVGRNPDMKKVFRDILIDLDKEKYTNPNMMVLDEKQLMDE

LKEFVKEKRCFIVIDDIWDKESWKLIRCALQESDCGSRLVITTRISEVATHAGEAYKIQPLSRDNSEKLLYARIV

DGEWKYFDNPSAKACEKILKKCGGVPLAIITIASLLASKPGEDWSEVYNSVGFGHEDNDDVDCLLYLCVFPEDHV

IEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQPVETKHEGYVDGCCVHDMVLDMIHSLSSEEN

FVTVLNGDERQKLPGSIARRLALQRVLVHKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETP

NVLEDRDKTMPSHLGSLLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEI

MVKIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDAAAVDDTTKSTMKFVNELGLLRELRVLRTYFEDLNESM

ERALLESLSKLHNIRDLHIEGPPLVTRRVTSSARSVSCLHLRYLCLNCFVFSGLPAWIKSSLAPNLSCLDVVVLI

VKEQDMETLARLPELRCLVLRLHETELVSIKIHTEDVGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIM

PSLEFLEFAVHMRFLKDATQLGFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQ

TKWQDEQAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLYRKSGKGLLALSSNA

VHKLWKWESNDKNPAGMSTTSVPPQVWQPESDILMNDTANGNPEEAAACSLLSKNDCYLISASGGKVSLFNMLNF

KTMTTFIAPPPSATFLAFHPHDNNIIAIGTDDSSILLYNIRVDEQHDKILTYLNRIAQVKWVLKGHQKKITGLLC

VWSMEDWAKKKSRYIQPPSNHSGALVGDIMVQFHYDQKRLLVVHESQLAIYDEELECLCSWFPSDPLSAPVSSAV

YSSDGLLIYAGFCDGAIGIFQVESLMLQCRIAPSAYIPSSVSSGGEIVYPMVVAAHPWKPNQFAVGMSDGAVHVL

EPLDTPDDIISNSIQQGRFGDSG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	308	374	8.5e-10
NB-ARC [Pfam ls]	308	621	3.2e-31
NB-ARC [Pfam fs]	397	516	9.5e-18
NB-ARC [Pfam fs]	586	621	7.3e-07
LRR [Pfam ls]	769	791	6.5
LRR [Pfam ls]	792	814	0.21

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	769	791	0.24
LRR [sensitive, ls]	769	791	6.5
LRR [sensitive, ls]	792	814	0.0079
LRR [sensitive, ls]	792	814	0.21

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	158	841	7e-36
Pi-ta [Oryza sativa]	170	797	1e-53
Mla1 [Hordeum vulgare].	177	1124	1e-127
RPM1 [A. thaliana]	206	919	2e-43
Pib [Oryza sativa].	215	522	5e-15
M [L. usitatissimum]	262	571	1e-10
RPS2 [A. thaliana]	347	944	3e-16
Pib [Oryza sativa].	348	1025	1e-42
Xa1 [Oryza sativa]	352	841	1e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3328.m00119

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)