Report for 3339.m00126

 > 3339.m00126, length: 736, copies: 1 

MAAWAWPLVFLVSCCCSWTQRRILVAATTDANDVTVLNALFTSLNSPGQLRGWQVNGGDPCGASWQGITCSGSSV

TAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKY

LNLNHNQLQGNMTDVFSNLPSLSTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKINSLQTDGNSW

STGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVALLVIGAVVAFFLIKRKRKGTR

QEHVEQRQPFNSYPSNEVKDVKPIPESTKIEVEPLPSPVAVSLKPPPKIERNQSFDDDDDDFSNKPVAKKSNSAS

VKATVYSVADLQMATDSFNMDNLVGEGTFGRVYRAQFSDGKISTIIYLFCLGSYQVFHTWIYKDSSFLHMINVAY

ISPYMNQVLAVKKLNSTVLPSQSSDDFFDLVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDMLHLPD

EYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKSSNILLDTEFNPHVSDAGLASSVPDSEFQASDQGSG

YSAPEVDMTGQYTLKSDVYSFGVVMLELLTGRKPFDSARLRTEQSLVRWATPQLHDIDALDRMVDPALKGLYPAK

SLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMTRRMIDGEEGSRRPDDQDQEFV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	123	146	1.3
LRR [Pfam ls]	147	170	0.002
LRR [Pfam ls]	171	193	0.093
Ser/Thr pkinase [Pfam fs]	393	411	0.011
Ser/Thr pkinase [Pfam ls]	393	707	5.5e-29
Ser/Thr pkinase [Pfam fs]	486	707	3.4e-29

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	98	120	0.48
LRR [sensitive, ls]	98	120	11
LRR [sensitive, ls]	123	146	0.054
LRR [sensitive, ls]	123	146	1.3
LRR [sensitive, ls]	147	170	8.6e-05
LRR [sensitive, ls]	147	170	0.002
LRR [sensitive, ls]	171	193	0.004
LRR [sensitive, ls]	171	193	0.093

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	69	219	3e-11
Cf-9 [L. pimpinellifolium]	73	219	1e-12
Xa21 [O. sativa]	73	219	1e-11
Pto [L. esculentum]	373	705	5e-38
FLS2 [A.thaliana]	374	716	8e-28
Rpg1 [Hordeum vulgare]	377	716	2e-18
Rpg1 [Hordeum vulgare]	457	708	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	270	292	out -> in
putative TM domain	415	437	in -> out

Report for 3339.m00126

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)