Report for 3347.m00138

 > 3347.m00138, length: 697, copies: 1 

MVTLLLAFRLSTLFLLLAAGAIAVDPDGAAAPDTAAAPDTEAAALLRLKASLIDPTNALEAWSPSSPSPPCDETH

RWPRVQCYNGVLIGLRLARLNLSGDFDFAALSRLPGLHSINLIRNNFSGPLPASLAAVRSLRALYLSRNAFSGPV

PGDVFAAMSWLKKLYLDRNDFSGELPAGAIAGAPRLQELHLDHNRIEGRVPSKLPATLRLFNVSHNRLTGVLPEA

VAARFNESAFAGNPGLCGAPGSGAGACAAAAPGPAHTAMPPMSAADYFAVQEETSVFVVMGIIMLVVLLVAGAMV

LMLRQDEGTSTASSGYEHPAIGAPSGNLSVPHAAGAAASAQLVTMEQGGSGAAGGAGGVGGVGGARKQVAEFVLM

SNAAGEFGLPELMKASAEVLGNGTLGSAYKAAMRNGVTVAVKRMRDMNRVGRAEFEEHIRMLGELRHPNVLSPVG

YHYRKEEKLIVSEFMPRGSLLYVLHGDQSPERVVLDWPARMRIAVGVVRGLSYLHEKLGIPAMRLVSMTGADFDA

PPPPPPHGNLKSGNILLDAHLEPRIVDYGFFPLVNTSQAPHAMFAFRSPEAASAAAAGAGAAAQRAALSARSDVY

CLGIVLLELVTGKFPSQYLLTARGGTDVVQWAASAVAGGTEQEVVDPVVAAGAGPAAVRLLRVGVRCTIPEPESR

PSMADVARMVEQVAGGGGGGAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	135	159	0.2
LRR [Pfam ls]	185	205	0.11
LRR [Pfam ls]	207	231	4.8
Ser/Thr pkinase [Pfam fs]	393	507	1.4e-11
Ser/Thr pkinase [Pfam ls]	393	685	6.3e-12
Ser/Thr pkinase [Pfam fs]	594	615	0.004

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	111	134	3.6
LRR [sensitive, ls]	111	134	39
LRR [sensitive, ls]	135	159	0.019
LRR [sensitive, ls]	135	159	0.2
LRR [sensitive, ls]	160	184	1.8
LRR [sensitive, ls]	160	184	19
LRR [sensitive, ls]	185	205	0.01
LRR [sensitive, ls]	185	205	0.11
LRR [sensitive, ls]	207	231	0.44
LRR [sensitive, ls]	207	231	4.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	41	222	1e-14
Cf-9 [L. pimpinellifolium]	90	226	4e-11
FLS2 [A.thaliana]	106	690	2e-29
Rpg1 [Hordeum vulgare]	390	613	3e-11
Rpg1 [Hordeum vulgare]	394	613	9e-18
Pto [L. esculentum]	395	686	6e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	24	out -> in
putative TM domain	281	303	in -> out

Report for 3347.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)