Report for 3354.m00172

 > 3354.m00172, length: 767, copies: 1 

MGGVVEQIVVSALTGAMSPLLRKLTNLIEKKYMEVKGVRKKLEQLTKELMTIGIALEKYAAMDSPDVQVKAWMAE

MRELAYDMEDSIDLFTYRIDHEPADTTNGVKRVLHKTLRKVKKFHHRHKFAKEIEELHVLVNEAYERQKRYRIEE

GTSSKLCREIDPRLPALYVEKEKLVGIQGPMKEIINWFGSEEVEPIGQRKIVSIVGQGGLGKTTLANQVYQKIKG

QFSFSAFVSVSQKPNMDNLLRELLSQIKSNEPTESYSDQQLIDKLRTCLKDERYLIVIDDIWKRSAWKTIQCAFP

INKHASRIITTTRIKSVAQSCCGASDEGFVYQMKPLNKSDSENLFLTRTFGAEKKCPSQLEGIISDILYKCDGLP

LAIITIASLLADKPRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKSCLLHLGLFHLRYLGLRWS

RIDCLPVQIGKLEYLQTLDLRHTSLLVMPESIVQLKRLMRLVGHHLILPDGFGNMESLQELGFLGCCRSSTNLLK

FQKDLQLLRNLRVLKVRFLSEGETGKEAMIPSLCKLGGNNLREVYITSCNGSGDCFADSWCPSPCFLEKFVYKSS

CNIHYFSRFPKWIHPTLSRCLTYLDIDVKQMEREHVRILEDLPALIVLHLDIGEALVYGIRISHGAFQCLARLRF

CNRSGPGLVFKGGMPKLEWLSVEFGAERAQSTYGSLEVGIRHITSLKHIDFSILVLTDDMEWKIKSSINSQVKML

PQRPEVNIKTVLLPSIK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	440	1.1e-49
NB-ARC [Pfam ls]	159	462	6e-45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	13	440	9e-78
RPM1 [A. thaliana]	23	444	5e-44
Pi-ta [Oryza sativa]	36	445	4e-51
I2 [L. esculentum]	40	444	2e-27
Pib [Oryza sativa].	56	327	5e-14
RPS2 [A. thaliana]	123	440	1e-18
N [N. glutinosa]	147	440	1e-11
M [L. usitatissimum]	169	442	4e-11
Pib [Oryza sativa].	170	440	1e-34
Xa1 [Oryza sativa]	201	444	8e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3354.m00172

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)