Report for 3355.m00123

 > 3355.m00123, length: 597, copies: 1 

MSSPSSPPPANQTATPPPANQTAAPPPASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTT

PVVVGIVVGGLVVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPPPPPPFKGDHYGGVYQNWQQ

NGPPPPPDHVLKKVPSHPSPPPPPAPLNVHSGGSGSNYSGGDNSQPLVSPGAALGFSRCTFTYEDLSAATDGFSD

ANLLGQGGFGYVHKGVLPNGTEVAVKQLRDGSGQGEREFQAEVEIISRVHHKHLVTLVGYCISGGKRLLVYEYVP

NNTLELHLHGRGRPTMEWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDARFEAKVADFGLAKLTSDN

NTHVSTRVMGTFGYLAPEYASSGQLTEKSDVFSFGVMLLELITGRRPVRSNQSQMDDSLVDWARPLMMRASDDGN

YDALVDPRLGQEYNGNEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLDDLNEGVRPGHSRFLGSYNSNEY

DTGHYNEDLKKFRKMAFGSGNLESSQQTQPTEFVPNRSVSMGDARQIPETEMEMGSLKKDGDSNGTRDSQAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
Ser/Thr pkinase [Pfam fs]	223	430	3.7e-49
Ser/Thr pkinase [Pfam ls]	223	498	8.2e-44

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pto [L. esculentum]	185	504	3e-60
Rpg1 [Hordeum vulgare]	185	497	3e-30
FLS2 [A.thaliana]	211	432	2e-36
Rpg1 [Hordeum vulgare]	211	496	3e-34
Xa21 [O. sativa]	212	309	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	78	100	out -> in

Report for 3355.m00123

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)