Report for 3357.m00146

 > 3357.m00146, length: 237, copies: 1 

MPSARKVTSTDATIDEKSIGQMVAGLVGETKINASREVVPNEVLQVGNSLRILDLTNNKIAEIPQEVGTLVNMQR

LVLAGNLVESIPANIGYLRNLKILTLDRNKISVLPEELGSLSNLQQLSISQNSLSRLPKSVGDLRNMLLLNVSDN

KLIALPESIGGCSSLEELQANGNSIEDVPSSICNLVCLKSLSLNGNKIRQMDGFTEFEARRRKKFDKQIDSNVMM

SSTALDEGIDLN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	49	71	0.057
LRR [Pfam ls]	72	94	2.7
LRR [Pfam ls]	95	117	0.06
LRR [Pfam ls]	118	140	0.15
LRR [Pfam ls]	141	163	6.8
LRR [Pfam ls]	164	186	0.41
LRR [Pfam ls]	187	208	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	49	71	0.0018
LRR [sensitive, ls]	49	71	0.057
LRR [sensitive, ls]	72	94	0.086
LRR [sensitive, ls]	72	94	2.7
LRR [sensitive, ls]	95	117	0.0019
LRR [sensitive, ls]	95	117	0.06
LRR [sensitive, ls]	118	140	0.0047
LRR [sensitive, ls]	118	140	0.15
LRR [sensitive, ls]	141	163	0.22
LRR [sensitive, ls]	141	163	6.8
LRR [sensitive, ls]	164	186	0.013
LRR [sensitive, ls]	164	186	0.41
LRR [sensitive, ls]	187	208	0.13
LRR [sensitive, ls]	187	208	4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	39	198	8e-15
FLS2 [A.thaliana]	50	196	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3357.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)