Report for 3374.m00164

 > 3374.m00164, length: 905, copies: 1 

MAEGVVGSLIGKLGAALAKEAATYGASLLCQEVSALKRLFAQIRDVKDELESMEAYLHGAERFKDIDETTGNYVK

KIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGH

SKSPEQSFQFAREEDLVGIEINKELLMQWLVGDSEQGCKIATVWGMGGVGKTTLVSQVYKTVKLDFDVSGFVTVT

NSYQFDDLLKKISTEFEIPIDADNIAVGSLVESIHHHLQGKRYILVLDDVWQPDVWFKLRNAFPTESTGRFIFTT

RMQEVALLATKKCTIELAPLDAHCSWQLFCKEAFWNADNKTCPEELQDIASMFVDKCAGLPIAIACIGRLLSCKH

PIYSEWEHVYKDLELQLTNNVILDVDIVLKVSLEDLQRNLKNCFLHCTIFPESYAFNRKRLIRHWIAAGYIQEVG

SKTVEEVAEGYLNELVNRSLLQVVERNLSGRVRRCRMHDIIRLLALRKSKEEFFCQVYKGSEACSIENTRRLSIQ

NVSIQHLSGSSAPCLRSLHVFSIYRRIDSLEAFLKSFKFLSTLDLQGISIKRLPKIVFDLFNLRFLGLRKTYIEY

LPKELSRLQNLEVLDAYDSKLLILPVEVATLWKLKYLYVVRVPEGSYDRVLAFDGLQVPMGICNLIDLLALQLIE

ASTEVLRHIGCLTKLRTFAIGKVRNEHCADLCDAIMRMTCLVHITIISADEKEVLQLETLCLPSTIAKIDLGGRL

SKESMSQLISTSSNLVNLTELNLCFSKLNEDSFACILNLHNLVELYLSKAYDGKELIFHATSFPKLKLLAVWDAP

YLRKVAIQQGALQSLVRLWLADCPELRDVPDGIEHLRTLEHLRIKGSSDELWRKLEIKGKSNKRNEDRMKISHVK

WVEIV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	451	1.2e-69
NB-ARC [Pfam ls]	150	451	3.3e-70
LRR [Pfam ls]	587	609	8.7
LRR [Pfam ls]	839	862	5.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	518	541	4.6
LRR [sensitive, ls]	518	541	91
LRR [sensitive, ls]	564	586	7.4
LRR [sensitive, ls]	564	586	150
LRR [sensitive, ls]	587	609	0.44
LRR [sensitive, ls]	587	609	8.7
LRR [sensitive, ls]	610	633	2.1
LRR [sensitive, ls]	610	633	41
LRR [sensitive, ls]	767	790	1.8
LRR [sensitive, ls]	767	790	35
LRR [sensitive, ls]	839	862	0.26
LRR [sensitive, ls]	839	862	5.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	846	5e-59
RPM1 [A. thaliana]	27	899	1e-114
I2 [L. esculentum]	43	639	2e-47
Pib [Oryza sativa].	53	350	1e-10
Pi-ta [Oryza sativa]	67	690	3e-49
N [N. glutinosa]	105	870	5e-13
M [L. usitatissimum]	113	425	6e-14
Xa1 [Oryza sativa]	119	599	2e-32
Pib [Oryza sativa].	126	641	4e-46
L6 [L. usitatissimum]	164	425	1e-14
RPS2 [A. thaliana]	164	881	2e-33

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	62
putative coiled-coil	117	137

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3374.m00164

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)