Report for 3378.m00146

 > 3378.m00146, length: 1401, copies: 2 

MEVALGTAGWVVGKLVDLLSAELLKALDESYNLGGNASAIKAQGRNVAHSPALAELLRQLSHLAEDADNVLDKVD

YYRIRDHVKRTHEAVDDDQVVDGRLVRRSILHARHAVGKCRRSLASSLSCRGRAAVDVEFFNRSIVSERIKSLMA

QMQPLCAKISDFLKLELMDPRTTAANTTAAAAFSERVTTTTSTSLEAKLYGRYAEFYAAINEITGDRDGLAVLPV

VGPGGIGKTTFTQHLFHDQRVKKHFHVRIWVHVSLRFDVLRLTKEIFNNMVASEVSWRRRWGNEREPHNLEQLQT

LVERRLQSRRFLLILDDMWPCDSEYKWDKFLAPFRKTSAKGSTVIVTTRSEETADMVKSETNLLIRLGGLDSRPI

WAFFLACALGDERAEHHKELLDLGREIVKKLKFSPLAAKTVGRLLKKNLTRRHWSRVLDSKEWEHADSVNDIMPA

LKLSYDCLPFHLQKCFTYCALFPDDYQYQDSELTHLWSALGVINCSGQDDRIQDIGLKYINGLVNNGIFQKVDGV

KFSHKKGREVKHTYYVMHGLLHELARIVSSRECLSIDCSNPRFAYTPPSIRHLSIRTSCTSDTVGLDHYQNFKEE

IRNLKEQISVANLHTVMFIGEYDERFSEAFKEILQDVKHVRVLRLFQTTLEFLPSKLIHLRYLRIQASKKTMNTQ

LKLNRSVTRKWDKFRLMMGEIQTPATNDHLTSLPSSLPEYYHLRFLDLQDWTGMTTVPKHMQISHLIYLRQFLAS

KELQSSVAKIGMLKLLQELSKFQVNREERAGFELQQLGELRDLGGALTISNLHKVKTRTEAEKAKLTLKRNLVRL

KLVWDETGREQTEEEANSIEGLQPPANLRELCIKNHKGNSCPSWFDSTISLKRIEVLHLHGVSWNTLPPFGQIPY

LQKLKLENIAIEKFEVRYESLETLKSIEFNGMLSMVEWVSGNTWHLFSQLEQVKVSNCPVLKELPFSHDLKLLQT

PDAQERHIFRPDLQILRVIGWRTSQASPVEHKCMTLKTNLRELVVRDCPQLSLPLMPYTTKLELAKVASRPYKLL

YDIHMLEIRGVDNILLNLGNLDNVLAFHDMEWLVRVTIKVCSSVPLATLQKLTSLETLAIEDCISLSSGRGESDA

IQIPIKHLMLRNCYITGKELSEILACCPCLSHLEMEDCKGITGLCMQQSSHEMDDDDNDIDGMLQFPSQFTSSLS

RLGIFSRDHLTMNVKDEVLKKLMSLHWLQLGGCVLSCAAMQAVHDDLPLMNNLKALRAYGYDIYDLEEDRLMTRM

ARTVVAGSKELEELDIGSISGVLAAPICQRLSASLHRLTFRNDTMVQHFTEEQETALKLLTSLQELIFYGCNRLQ

SLPSSLRSLRSLKRLEVSYRQLQGYSPELEEQCNNLRQHIPEVVLTCIPLF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	183	498	1.3e-50
NB-ARC [Pfam ls]	183	498	2.2e-50
LRR [Pfam ls]	1337	1360	0.087

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	639	661	0.83
LRR [sensitive, ls]	639	661	19
LRR [sensitive, ls]	949	971	1.3
LRR [sensitive, ls]	949	971	29
LRR [sensitive, ls]	1129	1153	2.2
LRR [sensitive, ls]	1129	1153	52
LRR [sensitive, ls]	1224	1254	1.9
LRR [sensitive, ls]	1224	1254	43
LRR [sensitive, ls]	1337	1360	0.0037
LRR [sensitive, ls]	1337	1360	0.087
LRR [sensitive, ls]	1361	1387	1.5
LRR [sensitive, ls]	1361	1387	34

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	48	1289	1e-87
Xa1 [Oryza sativa]	130	1378	1e-106
Mla1 [Hordeum vulgare].	141	524	5e-20
RPS2 [A. thaliana]	155	1042	2e-22
Pib [Oryza sativa].	166	587	1e-24
Pi-ta [Oryza sativa]	194	591	3e-17
N [N. glutinosa]	218	536	1e-10
RPM1 [A. thaliana]	222	1006	8e-30
Xa1 [Oryza sativa]	836	1381	5e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	902	922

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3378.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)