Report for 3385.m00163

 > 3385.m00163, length: 678, copies: 1 

MAASSAQLIFLLLLAVLAAASSRNDEEARALMALKESLDPAGRVLGSWARSGEPCGGSFVGVTCDSGGRVTAISL

QGRGLSGTLPPAIAGLRRLTGLYLHYNGIKGAIPREIGSLSELTDLYLDVNHLTGPLPVEIAAMENLQVLQLGYN

QLTGSIPPQLGKLNKLAVLALQSNQLTGAIPATLGDLTQLARLDLSFNSLFGSIPSKIAEVPLLEVFDVRNNSLS

GSVPAGLRRLNGGFQYVNNKGLCGVGFSLLDLCLSSEDGLKPSKPEPFGPDGTVKTRQVPQSANTDNHCEGSGCS

KSSNASVGVLVVGVVAVVIGAAFCGIFAFSYYRRQKQKIGSSLEVSDSRLSTDHYQQKEVCRRSASPLISVEYSN

GWDPLSGGGVGSSGEVGDSFRFNLEEVECATQYFSEVNLLGKSGFAATYKGILRDGSVVAVKSLNKTSCKQEESD

FLRGLKMLTVLRHENLVGLRGFCCSRGRGECFLVYDYMVNGCLSQYLDVKEGSGANVLDWPTRVSIIRGIAKGVE

YMHSKKANKPSVVHQNISAEKILLDHHLTPRLSVPGLHKLLADDVVFSTLKASAAMGYLAPEYATTGRFTEKSDV

FAFGIVVLQVITGRRAVSQLKVSTVANDLDSLIDENLNGVFSRTEAAKLAAIAALCTSETASQRPTMEAVVQQLS

NCH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	93	116	0.84
LRR [Pfam ls]	141	164	0.0039
LRR [Pfam ls]	165	188	3.9
LRR [Pfam ls]	189	212	3.6
LRR [Pfam ls]	213	236	7.1
Ser/Thr pkinase [Pfam fs]	409	613	4.9e-24
Ser/Thr pkinase [Pfam ls]	409	676	1.4e-19

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	69	92	0.89
LRR [sensitive, ls]	69	92	21
LRR [sensitive, ls]	93	116	0.036
LRR [sensitive, ls]	93	116	0.84
LRR [sensitive, ls]	117	140	1.4
LRR [sensitive, ls]	117	140	32
LRR [sensitive, ls]	141	164	0.00017
LRR [sensitive, ls]	141	164	0.0039
LRR [sensitive, ls]	165	188	0.17
LRR [sensitive, ls]	165	188	3.9
LRR [sensitive, ls]	189	212	0.16
LRR [sensitive, ls]	189	212	3.6
LRR [sensitive, ls]	213	236	0.3
LRR [sensitive, ls]	213	236	7.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	7	674	3e-48
Xa21 [O. sativa]	8	243	7e-33
FLS2 [A.thaliana]	17	229	2e-30
CLV2 [A. thaliana]	26	269	8e-17
FLS2 [A.thaliana]	45	232	2e-21
Xa21 [O. sativa]	57	229	5e-18
CLV2 [A. thaliana]	58	232	3e-17
Cf-9 [L. pimpinellifolium]	60	235	3e-12
Cf-9 [L. pimpinellifolium]	65	228	3e-14
FLS2 [A.thaliana]	69	235	2e-23
FLS2 [A.thaliana]	69	229	3e-19
Cf-9 [L. pimpinellifolium]	70	230	5e-14
Cf-9 [L. pimpinellifolium]	70	253	4e-13
CLV2 [A. thaliana]	70	236	4e-17
FLS2 [A.thaliana]	70	236	5e-20
Xa21 [O. sativa]	70	235	2e-16
CLV2 [A. thaliana]	72	229	1e-14
Cf-9 [L. pimpinellifolium]	73	228	3e-14
Cf-9 [L. pimpinellifolium]	73	269	1e-13
CLV2 [A. thaliana]	73	235	3e-20
CLV2 [A. thaliana]	73	232	2e-19
FLS2 [A.thaliana]	73	244	1e-25
FLS2 [A.thaliana]	73	249	7e-24
FLS2 [A.thaliana]	73	235	2e-22
FLS2 [A.thaliana]	73	235	2e-21
FLS2 [A.thaliana]	73	228	4e-20
Xa21 [O. sativa]	73	497	4e-25
Xa21 [O. sativa]	73	258	7e-25
FLS2 [A.thaliana]	77	265	4e-24
CLV2 [A. thaliana]	82	235	2e-11
Rpg1 [Hordeum vulgare]	387	676	1e-25
Pto [L. esculentum]	393	674	5e-38
Rpg1 [Hordeum vulgare]	395	674	8e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	22	out -> in
putative TM domain	5	22	out -> in
putative TM domain	307	329	in -> out
putative TM domain	307	329	in -> out

Report for 3385.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)