Report for 3413.m00150

 > 3413.m00150, length: 1122, copies: 1 

MIATAALPPAARSAEALAAEVGGHAHAAADELRGLARRLDAVGAAAAGAEAREARDAGARAWLREILDALYELGD

ARDDFRRAADAAARPRRQQEEGRRSFLHWFTIPPNLYGMRYKTLKTSINSLNMKMDGILQKGSELGLLPIDQEIL

NERSEISLEVIPDDYIVGDIENEANKLIDILTDRKSAKTLVAIVGGSGTGKTTLAWKIHDDHRTRNAFGMIVWVS

VFNDFDDIGLLSAIVTAAGGNPKEAKNRTQLELMLASMLKGKRFLLVLDDVRGHQIEENSLEAHWHVCGHGSRIL

ITTRDENVATKLNASYIHQVKELSFQNCWSLLCCNACLDENLHGNTLRNIGIMIIQKCKKIPMAVKIIGAVLRRK

EQTQESWQRVYEFEGWSFDDLRGDVQGLTGAIYLGYHDLPSHLKQCLLYLSLFPEGSTIRQQFVTQLWISEGLID

RQDDCSAEKIAEEYYEELISRNFLQLETGNRDITRCTMHDQIRSFLQFFVKDKICSGEVKPGTNGTSSEGLRHVW

ISGTSTTTNLEETVTSLKTVILYKNPLRNQGLDKLFKGLKYLHVLDLGGTEIRYIPRTLEFLVHLRLLNLSLTRI

TELPESISYLRNLQFLGLRYCNWLHTLPKGIGNLHRLQTLDLRGTSLHQVLPSLVNLKQLSTLHGFTVNRTPIPE

DDPSGWPLENLKDLNALRSLQILKMEKVSDFSRVKEAMLEMKSQLKDLEICCSNDDRLAEAREDDSRTLKQIFDS

LSPPQCLKSLKIVSYYARHFPNWLPCLTNLQRLVLSDCKFCEHMPDLSKLNQLKFLTITGCSKLLTVEQESTGVT

QAFPKLEQLHLKDMPKLVSWIGFASGDMPSLVKFCLESCPKLKCLPEGLKYSRVLRSVQIRHADSLEVIQDLPVL

KELNVQACNELKIVSNLPLLEVLTIRRCPRLDDVSGVHYLSHVCITDKELRKLPDWLSIHAPVLQTFNIVGVSEL

LDRLLPNGEDWEIIRQIDKVYANLLDESPFFTYTKSSGDFHVDQRIGEINKPPVVLGHGTAVGGLSIPDHSVEIS

SQIGVSRVPMNRISTLRWVVRSYLVPYLIMVMVVMQFLSYYLHNRSTREIWLVQTLFIFFATVFLLLLVFLD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	151	276	7.3e-15
NB-ARC [Pfam ls]	151	454	1.2e-43
NB-ARC [Pfam fs]	296	454	3.4e-30
LRR [Pfam ls]	589	611	0.86
LRR [Pfam ls]	612	635	2.5
LRR [Pfam ls]	636	658	4.7
LRR [Pfam ls]	779	801	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	541	565	0.36
LRR [sensitive, ls]	541	565	7.3
LRR [sensitive, ls]	566	588	0.38
LRR [sensitive, ls]	566	588	7.9
LRR [sensitive, ls]	589	611	0.041
LRR [sensitive, ls]	589	611	0.86
LRR [sensitive, ls]	612	635	0.12
LRR [sensitive, ls]	612	635	2.5
LRR [sensitive, ls]	636	658	0.23
LRR [sensitive, ls]	636	658	4.7
LRR [sensitive, ls]	779	801	0.091
LRR [sensitive, ls]	779	801	1.9
LRR [sensitive, ls]	802	826	3.1
LRR [sensitive, ls]	802	826	65
LRR [sensitive, ls]	855	875	3.6
LRR [sensitive, ls]	855	875	73
LRR [sensitive, ls]	899	924	4.9
LRR [sensitive, ls]	899	924	100

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	32	931	4e-78
Mla1 [Hordeum vulgare].	32	692	2e-32
RPS2 [A. thaliana]	89	871	2e-42
M [L. usitatissimum]	114	983	1e-13
N [N. glutinosa]	145	917	6e-15
RPM1 [A. thaliana]	146	890	6e-41
RPP5 [A. thaliana]	163	932	1e-12
Pib [Oryza sativa].	171	885	6e-36
Pi-ta [Oryza sativa]	176	698	2e-19
Xa1 [Oryza sativa]	180	918	2e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1070	1092	out -> in
putative TM domain	1099	1121	in -> out

Report for 3413.m00150

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)