Report for 3443.m00088

 > 3443.m00088, length: 977, copies: 1 

MEAALLPSSTLLPKLVELSWYLLLKEDIRVIRSGGGHKITLAKQDLQELQNCINKASFFLAGTGRINAQSWQTSR

LHTWISDALKAASCLEDQIAMYAMRGVYVGHLYAMKSAIGMLSTDKLVKIIRDRKNEMPTEVQNYHQEVMERLPA

ILPFTPHSHCEEQDTVPIGFMEKIEELKNILLRDAAPVIFVSGEQLSGKTTLMNQVYKDIDVRNHFKIRSKVDMS

KTRCLSDLLRAVLKHEERETNSMYPDAIDELKIIEEIQRTFRTVGNRYLMVMDDVDDTSSLHVLRHVLGGWEGKI

VCLTRNTRIQYEELHAKVEIRPLELAYQQQLLVHVAFRNADDTPAPVAVDRNNDGQQGGGEYDQLEKALKGKTET

DNIDGDDLTPMVETLKGILRKCRGNPWNIRAVGALLGANRVDKWKEIEENQVDDLVIGDKKRDPLIPAEYAQLPA

DIRLGFLYCLAFPERSEIPENSLIPARKLVRLWTAEGFPPNDSPLQSQEQEAENLLQRLIDYKLLVVKKTGLDGE

VLKCKVNEHMRSLALEMCEAQKICRFARDPAHPAPRTRPSSSLFSRKTALLHRYRVLAVHGDGDGNEAVQEMSSA

MSKDIRLRSLLYFRTERKEPPKLELSFGRTYKLLRTLDLQGTRLTRLHSSITCLVCLRYLGLRGTQLEYLPETLQ

SLRRLMCLDIRDTGITEVNDVSEFKEMRHLYLANSFRDQSVLIKEGLLSLLHLQTLSGATHEVPSERKKAGMVPF

EQELLYLKLLRKLSVKKASISCSKGISDAINKMDLLQSLTITCAAGEKRGFNLSYLNVNKNLRKLKLGGRMQKFD

RLQPKLQSITYLYLWDSKLPVEGKDPLQLLQGLQQLLLLSLYNVYEGEKLTCTNGYHKLKKLSIIAMGKLNECTF

GTKNMANLEVLVFAKCARLSSPPPKLDELNFLREVHLAQMPQGFYDGMKPATKKLVHFPEFQHHFHSSTRAVVQG

GS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	155	494	2e-10
NB-ARC [Pfam fs]	197	283	5.8e-07
NB-ARC [Pfam fs]	386	494	3.7e-08
LRR [Pfam ls]	633	655	4.8
LRR [Pfam ls]	656	678	0.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	633	655	0.21
LRR [sensitive, ls]	633	655	4.8
LRR [sensitive, ls]	656	678	0.03
LRR [sensitive, ls]	656	678	0.7
LRR [sensitive, ls]	679	700	4.4
LRR [sensitive, ls]	679	700	100
LRR [sensitive, ls]	833	859	2.3
LRR [sensitive, ls]	833	859	53
LRR [sensitive, ls]	907	930	0.54
LRR [sensitive, ls]	907	930	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	156	946	2e-14
Pib [Oryza sativa].	168	688	9e-16
RPM1 [A. thaliana]	188	967	2e-36
Mla1 [Hordeum vulgare].	198	803	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3443.m00088

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)