Report for 3470.m00173

 > 3470.m00173, length: 635, copies: 2 

MAILTRIPDNKCSSRIIVTTRIEHVARACSPASPGEDYIHRIKPLGSEDAKELFVNRVFGPQKDCPEQFEEIMYK

ILTKCSGLPLAIVCIASLLGSYTSPGGVEVWTRVCNSTGSLMENNPTLDGMRQILTLSYNHLPHHLKACIMYLST

FPEDYAISRDRLVQKWMAEGLIPEMRGLTSAEVAEAYFDELLSRNMTTTVSYSNDGKPNSCSVHDMMLEVIVSKA

LESNFVSLVGGQCGSMPYSSVRRLSIQNDDIGSGIDNTNLRHVRSLTVFRPEGHRKLLDRLAEFSLLRMLDLEGC

KDLRNKHMKHICRLFLLKFLSLTDTDITKLPSQINKLQHLQTLWLFNTLLDKVPESLVDLENLKQVGFSNRQDWR

KLLRLPQHISKMKAIEELTRFELLSEDAQLAMEIGDLVHLQFLNVVLNCFDCSDGQLLTELAKSIGRCSLYRLKV

EDMMPDSNNMNFLLNLPSPPKLLRYLCIGGTIDRIPGWVQSLTHLVHVEFWWIYLPSDEIYGALYKLPSLTKISL

DRWCCSEDELVARTDFKFPLLKVLSFVPDEGTPQVVRFEEGAMPKLETLVMYFHDKKRSLEGVEHLTSLKDVRVR

GSRDNHEMGTAVIQLKEENARRHSSNQFKVIVEYE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	177	1.7e-05
NB-ARC [Pfam fs]	14	177	7.3e-32

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	245	269	4.9
LRR [sensitive, ls]	245	269	100
LRR [sensitive, ls]	316	338	0.27
LRR [sensitive, ls]	316	338	5.6
LRR [sensitive, ls]	339	361	0.65
LRR [sensitive, ls]	339	361	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	5	599	3e-56
RPM1 [A. thaliana]	7	599	7e-45
Pi-ta [Oryza sativa]	7	343	1e-52
RPS2 [A. thaliana]	8	523	2e-12
Mla1 [Hordeum vulgare].	10	570	8e-58
I2 [L. esculentum]	14	393	3e-27
Xa1 [Oryza sativa]	16	396	3e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3470.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)