Report for 3474.m00113

 > 3474.m00113, length: 1056, copies: 1 

MSNKQIFQVYHGPGNVRYGPTGVDLSDFIVSERGIDRPAERSVPSIKGWLMRGLRVDPQTSDITINVIVYGLRIH

RVGRYRKSRSRPNHLFTRSLEPPRRCQYREWIDTRRVLTPPSRVVQFELPEQYRVTKARFERGEGSSRRGLNPQK

DSQGSRLPVIGLKLKFEHEEGSKILASKLKKQAPDLLEVTNKMRLLQSDFSMLQAFIAQVAVDRSNDMVLEAWME

QVRLAAHEAEDIVDEYTYLVGQTEGTGSFLKKAFNQAIEVKKWRKLSAQAKLVEDRLQKISEAKNRFDISFASSG

RENTASYPSRHHHLSEYSYLNDDDDLVGNAEEMKRLIEWLCDAKKDRSVISICGMGGLGKTTLASSIYKKEEIKR

TFICRAWITVSQNHGVKNLLKKILVQLMSKTENIMDGADTMDCVSLVEQLQRYLKGRRYLIVLDDVWSREAWPLL

DNAFVKNNNGSRVVITTRIETVASLADANYELKLTLLPKQEAWTLFCQKAFSRLDDRSCPHNLKTVAERIVEKCQ

GLPLALVAIGSLLSYKEMDEHEWELFYNQLRWQLSNNPELSWVASVLNLSYNDLPSYLKNCFLYCGLFPEDYRIE

RKRLIRLWIAEGFVQDRGPETTLTDVAACYLKELASRSLLQVVNRNEYGRPKRFQMHDLVREISLTISKKEKFAT

TWDCPNSDGVTDGSRRVSLQKDGNLVQAAKCSSQLRSMLMFTEEISLSWFTDCYQSFRLLRVLCLRNCNVHKVPD

SVSQLFNLHYLDLGYTKLKEIPSSIGKLSNLQTLYLNGSVLELPSETTMLTKLHHLLIDVGRFGKSASSKISCLE

HLQTLRSIEANSYIVKNLGCLTRMRSVGIMKVLESHNTDLWTSISKMTSLNSLSVLAEDRDRYALDLGNLKPLSH

LEKLMISGRLHKGAIPPVFASFTKLRSLSLCFSGLHEDPLASFAAMFQNLGHLNLYRCFDGAKLTFRAGWFPNLK

HLYLSSMNELREVEVEDGAMRSLWRLELWSLKSLTSVPQGFVHLRSLQQLCIGSLMPEEFHRRLEGIDRWIVRHI

PYIGDP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	309	619	5.8e-101
NB-ARC [Pfam ls]	309	619	1.6e-101
LRR [Pfam ls]	757	779	0.037

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	734	756	0.82
LRR [sensitive, ls]	734	756	17
LRR [sensitive, ls]	757	779	0.0018
LRR [sensitive, ls]	757	779	0.037
LRR [sensitive, ls]	780	807	1.6
LRR [sensitive, ls]	780	807	33
LRR [sensitive, ls]	924	951	1.7
LRR [sensitive, ls]	924	951	35
LRR [sensitive, ls]	973	996	2.1
LRR [sensitive, ls]	973	996	43
LRR [sensitive, ls]	997	1020	2.3
LRR [sensitive, ls]	997	1020	47

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	176	810	3e-50
I2 [L. esculentum]	193	991	1e-63
Pib [Oryza sativa].	202	547	2e-14
RPM1 [A. thaliana]	219	1053	1e-121
Mla1 [Hordeum vulgare].	223	895	1e-68
Xa1 [Oryza sativa]	260	907	1e-44
L6 [L. usitatissimum]	313	767	3e-17
M [L. usitatissimum]	313	1029	3e-18
N [N. glutinosa]	318	1026	6e-15
Pib [Oryza sativa].	321	1003	2e-52
RPP5 [A. thaliana]	324	958	1e-13
RPS2 [A. thaliana]	326	988	4e-41

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3474.m00113

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)