Report for 3492.m00194

 > 3492.m00194, length: 871, copies: 2 

MEIGLTLGRGAAETVVRPAFDKVQYWIELLQGKHTSTEEMVNELDILEGLIKDTDSSSAIHTLKAARGQAEDLCA

SIRDVIDDAKRFARYNHQHVPLRCIRKYTHNLVGKPSICETAERIVKLRSQVRRLQEILTPFVGQGMVPTSAQAG

RLQHRHVAHAEGHWEGMEEPKTSLFQYVLGRESHRQMVALVGMPGVGKTSLARYVYEDNKVKGHFNCHAWMTVEE

SCATKQLLLGMISRLYEEANVRLPDAINIMDEDELSGMIQRFLKQEERRYVIVFDDISRRGQLKLLSDLALPDKN

HPNYGRVIVTSRNREVIESCDHTITITQLTSPDDWNLFCYKAFGSSSFSPGEEICQHRERISNLCAGLPLAIDVL

SALLAKKDHSQWSSIISELESHGDLGAATEILETSINELPKNMGHKNCLLYFSMFPKSSTVSHNTLVRLWIAEGF

IKRQPRQTRQAVAEKYLSDLVDLHVLMVEDSYKYGRPKNYKVHDLMHQVIQKKAENEDFCTSCSDGNQQAPERVR

RMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLSMQGSLIEEFPKEIGNLTHLRYLNLRDTKI

SNLPMSLGNLTNLETLNLKGTFVSELPKSILKIQSLRHLLAYRYDAPKKPERQPEAIFGVRVPKGIGQLKQMRTF

SVVVADKESKIVKELINLKKLRRLGVLNLRREDGSDLCESIAKMDQLSSISITAMDDEYLDIHNLSVVPPQLQRL

YLRGQLQVVPQWFTSLHRLVRLLLSGSSLNEDSINILQSLPQLAELSLIRALNVDRIECQIGGFRNLKILDLDQL

NGLVNVTLHGSMRWSLTPETVAEMSKVTFLTGCKYLAQNGTMEFAL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	147	456	5.1e-31
NB-ARC [Pfam fs]	185	456	9.9e-33
LRR [Pfam ls]	566	588	2.6
LRR [Pfam ls]	589	611	0.074

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	566	588	0.099
LRR [sensitive, ls]	566	588	2.6
LRR [sensitive, ls]	589	611	0.0028
LRR [sensitive, ls]	589	611	0.074
LRR [sensitive, ls]	612	635	0.29
LRR [sensitive, ls]	612	635	7.6
LRR [sensitive, ls]	746	767	2.9
LRR [sensitive, ls]	746	767	76
LRR [sensitive, ls]	768	791	0.56
LRR [sensitive, ls]	768	791	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	1	639	2e-30
RPM1 [A. thaliana]	29	841	7e-91
Pib [Oryza sativa].	158	831	1e-49
Pi-ta [Oryza sativa]	158	702	1e-27
RPS2 [A. thaliana]	179	631	8e-22
Xa1 [Oryza sativa]	187	642	2e-29
Mla1 [Hordeum vulgare].	188	799	3e-42

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3492.m00194

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)