Report for 3492.m00195

 > 3492.m00195, length: 907, copies: 2 

MAAPAVPSPQKKLIEVLQREQDILWRILWENIDKVKELTDSTSATLRGPEIESMPKTAKIWLHQVREINRDIEDI

LEKSPSKTCSSKGSNILSCITQPINFVARQRIYKQVQSLSARIDTIKLRLSLLTNFDDKEAPANPTRYQLDDRQL

DMLSLDEAKVIGIGYPKAKVTQLLLDEEKQLRVISIIGSAGVGKTTLARSVYNDKKVQGRFRCHAWITIGAPIPM

VDRLKSIMVQIFVEKLEEIPARLDFMDEIQIAEVIGRYLADKSFLVVLDDIWNSDTWDYLKLALPNNGQGSRIIV

STRAQEIGRDCRLASDIQIFEKRPLNEDDAWLLFCNKAFPAIQARCPAELEETGRKIVRECHGVPLLVVTIGGLM

SMKEQTVQVWKNVLDNLHKKYLPEFTLPSILWFAYSDLPHHLKCCLLYFIMFPRKYSIKRMTLIRLWMAEGFIKN

DQESTLEDTAGRYLTELIDRGMVQVADFYDYGRVKSCSVHDMLREIIILKSTEDNFGIPVTRGVNKVRGNVRRLS

IINTNDDFLEDNSCTNLRTLFVFGASSISTTSLHAFLVGFRLLRILDLEGAPVESLPDELPDLFYLRYLSLRNTR

IDKLPKSLKKMMNLQTLDLKGTYVSQLPSGITKLESLRHLLAYRYYSGRHPPYYYTLGVTLPRGIGNLKELQKLT

YVEANQGNGTIEELGSLTQLRRLGIVKLRERDCMHLCSSVAKMTELLSLSASSLDDEILDLGSLNPAPQCLRRLY

LRGPLPGIPSWLHSLKNLVRIRLRWSRLNEDSLKELQSLPLVELALIQAYDGTKLEFTQGFARLEILELDHLTNL

EHINLEKSMPGLQKISIRSCDKLLTIPHGIEGLENLKELYLFAMPKNFVESLMTGGVKHRRVEHIPVIRHFNEHR

DISLTNL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	143	453	1.9e-68
NB-ARC [Pfam ls]	143	453	5.2e-69
LRR [Pfam ls]	590	612	6.3
LRR [Pfam ls]	613	635	0.92

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	567	589	0.31
LRR [sensitive, ls]	567	589	8.3
LRR [sensitive, ls]	590	612	0.24
LRR [sensitive, ls]	590	612	6.3
LRR [sensitive, ls]	613	635	0.035
LRR [sensitive, ls]	613	635	0.92
LRR [sensitive, ls]	767	790	1.1
LRR [sensitive, ls]	767	790	29
LRR [sensitive, ls]	813	835	2
LRR [sensitive, ls]	813	835	53
LRR [sensitive, ls]	836	859	0.61
LRR [sensitive, ls]	836	859	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	896	1e-119
Pi-ta [Oryza sativa]	4	698	2e-57
Mla1 [Hordeum vulgare].	12	801	1e-65
I2 [L. esculentum]	33	862	2e-52
Pib [Oryza sativa].	43	343	2e-17
Xa1 [Oryza sativa]	155	703	1e-39
Pib [Oryza sativa].	156	866	9e-70
N [N. glutinosa]	160	888	6e-14
RPS2 [A. thaliana]	175	838	1e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3492.m00195

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)