Report for 3494.m00122

 > 3494.m00122, length: 883, copies: 2 

MEGAIVSIATGALKPVLMKLATLVCNEYMISKEVHKEIETLSSELTAIHSFLLKMSEEENPDAQDHAWMMDVREL

SYDIEDIIDEFMVRVDDDSANPDGFISKCKNSLAKMKTRSRIAKAIRDFKSQITKVGDRHASNDGCESMQQQPKV

ISIVGFGGLGKTTLAYQVYQELKGKFDCSAFLSVSRNPNMMRILRTILSEVAQRDYALTEDGYEQQLIIKISNFL

SNKRYLIVIDDIWKVEIWNIIKGAFSMSSQCSKIITTTRINDVARSCCSSFSGHVYNIRPLNMVHSRHLFHRRLF

NSEEKCPSHLEEVSDQILKKCDGLPLAIIAISGLLVNKPMTKDQWDHVKNSIGSALERNPSVDVMISILSLSYYD

LPPHLKTCLLHLSIFPEDYLIEKDDLILRWVAEGFIHKKGSYTSFELGEMCFNELANRNLIQRCSNKDDWKVHDT

ILDFIISMSIKDNFVTLVASPDQTIGTNKVRRLSLQIGIEDGNSILQRRLSDLSHARSLDVFCYQPKLPSLLEFR

HLRVLSFRYCKWLKSHCIANIGRLFQLRYLNLKKTGLTELPEEIGCLQSLETLNVMDNHMVQLPQCITRLGNLMH

LFIGNQIQLPDGIAKMQALETLQAVDLSKHSSNIVKELGQLKNLRELNLLIYDYDACTEEHMKTIASCLLQLGTY

NLRRLNIMTSIILGNIYLPDPWCPAPLKLEGLDISGSPMPRVPTWIGSLVNLKRLGLALEGVNCEDLSIIGCLPS

LLQLSLRVPGYRDSLIISGCYGFSCLRDFCFIGQQPIFTAGSMPRLELLILNINASKPETVTNAALENLPCLMTV

QYLLYQYNKNDHEIENAEAALKRAAYTYLNKRSKASRQDGQCSRLGPQASRPWPAMHN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	105	416	3.4e-52
NB-ARC [Pfam fs]	143	416	4.3e-56
LRR [Pfam ls]	551	573	0.49

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	526	550	2.7
LRR [sensitive, ls]	526	550	73
LRR [sensitive, ls]	551	573	0.018
LRR [sensitive, ls]	551	573	0.49
LRR [sensitive, ls]	574	596	1.7
LRR [sensitive, ls]	574	596	44
LRR [sensitive, ls]	703	725	1.1
LRR [sensitive, ls]	703	725	30

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	6	849	1e-122
Pi-ta [Oryza sativa]	61	667	7e-72
Pib [Oryza sativa].	90	606	1e-59
RPM1 [A. thaliana]	143	755	2e-49
RPS2 [A. thaliana]	143	700	5e-28
N [N. glutinosa]	149	397	6e-12
I2 [L. esculentum]	150	757	2e-49
L6 [L. usitatissimum]	150	490	6e-11
Xa1 [Oryza sativa]	150	647	5e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3494.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)