Report for 3494.m00124

 > 3494.m00124, length: 966, copies: 2 

MEAQGAMDSLLKKLTNLLVEECARLKGVRREIRFLRSELNNMHALLQKCAAMENPDIQVKTWTKELRELSHDIED

CVDEYVHGVDTNDHHGHGGIKEFFRRCARRLKTLCTRHRIAKQIQELKARVVEVKDQRERYKLDDVAGSSYTSLT

IDPRMGALFTEEAHLVGIDGPRDDLVSWLMEGEAEHLNHRKVLSIYGFGGLGKTTLANEVRRKIGPQFGCAALVS

VSQKPDFKKILWGILSRITPKGTNLVRDLRETWDESETMLIEKIREILQDKRYFIIIDDIWSASAWDVLKCALPE

NKNGSRVITTTRIESVAKACCSLPSDRCYKIEPLSELHSRMLLFKRVFGHVDGCPVQITHVSDDILRKCTGLPLA

IVSIASLLASRSNTKEQWEKVSTSTGSVLQENHDLEGMKTILSLSYNDLPHYLKPCLLYLSIFPEDYDIERGSLV

RRWIAEGLVSEDYGQNVEDVAESYFNELINRSMILPVDIDYDGRVRVCRVHDMMLELMKSKAREENFLTIIGPSP

ISTKPKGVVRRLSIQYNDGDQKLAPQEVTSLNHVRSFSTFGDCLNQTLPFAYFRVLRVLSLDCELNEDVDLKIIC

KLHQLKYLRLNAFKLPAEIGELQCLETLEWCSFSWNSLLPDGISQLQHLRHLLVDNEGMLPKDIGSMQALRTLSQ

FNICDSPVNAVQELGNLRNLRELSISWDEDEPSDARYKEYLSSSLSKLSSCSLKSLSILSARPIPVDFLASLSPP

PCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVWELEDEDLDLLAHLPVLLQFHLWVVPLRKEKIVIKETGFRS

LVLFLLWSGLPCLSFQEKSMPKLETLKLMYSACGAELYGSTHSGIQHLKSLKNVHVEMYTAGAIQSNIEAAHRNI

NHEIAKHPSNLKTNITISSYIYFGEVMNDGNVDEEDSAHLTDNNGGKNQDEDNKVISALGCDGCAY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	150	464	1.1e-67
NB-ARC [Pfam ls]	150	464	3e-68

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	3	881	3e-66
Mla1 [Hordeum vulgare].	5	937	1e-128
Pi-ta [Oryza sativa]	7	695	9e-98
I2 [L. esculentum]	24	709	3e-35
Pib [Oryza sativa].	59	325	6e-15
RPS2 [A. thaliana]	110	652	1e-28
Pib [Oryza sativa].	160	652	3e-58
Xa1 [Oryza sativa]	192	701	3e-28
Pi-ta [Oryza sativa]	764	946	6e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	116	138

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3494.m00124

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)