Report for 3508.m00229

 > 3508.m00229, length: 702, copies: 1 

MASTTTKNALLLLLLLLLLFPLLHSSLADVAAAAPSSASAAEVDALMELKAALDPSGRLLPSWARGGDPCGRGDY

FEGVSCDARGRVAAVSLQGKGLAGAISPAVAMLPGLTGLYLHYNELAGAIPRQLGDLPMLAELYLGVNNLSGTIP

VELGRLPALQVLQLGYNQLSGSIPTQLGQLKKLTVLALQSNQLTGAIPASLGDLPELARLDLSSNRLFGSIPSKL

AAIPKLATLDLRNNTLSGSVPSGLKKLNEGFHFDNNSELCGAHFDSLKPCANGDEDDNEEGSKMARKPESTNVKP

LQAPQTMNVNRDCDNGGCSRSSSSSTTLSSGAILAGTIIIIGGAAACGISVISWRRRQKQKVGGGGTVESLEGRA

SSSNASSSLINVEYSSGWDTSSEGSQQGLRLSPEWSPSVRYNMEEVECATQYFAGANLLGRSGFAATYRGAMRDG

AAVAVKSIGKSSCKAEEADFLRGLRAITSLRHDNLVALRGFCRSRARGECFLVYEFMANGSLSRYLDVKDGDVVL

DWATRVSIIKGIAKGIEYLHSSKANKAALVHQNICADKILMDHLFVPHLSGAGEHKLLADDVVFSTLKDSAAMGY

LAPEYTTTGRFTDRSDVYAFGVVVFQVLTGRKAVSSELRLLGGGGGAEYSGKLDDLVDPRLGGRFSRPEAAKLAG

IALLCTSESPAQRPAMAAVLQQLGATQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	110	133	3.6
LRR [Pfam ls]	134	157	6.2
LRR [Pfam ls]	158	181	0.4
LRR [Pfam ls]	182	205	0.32
LRR [Pfam ls]	206	229	2.4
LRR [Pfam ls]	230	253	0.067
Ser/Thr pkinase [Pfam ls]	428	699	5.8e-14
Ser/Thr pkinase [Pfam fs]	449	546	1.2e-15
Ser/Thr pkinase [Pfam fs]	599	630	0.0057

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	110	133	0.14
LRR [sensitive, ls]	110	133	3.6
LRR [sensitive, ls]	134	157	0.24
LRR [sensitive, ls]	134	157	6.2
LRR [sensitive, ls]	158	181	0.015
LRR [sensitive, ls]	158	181	0.4
LRR [sensitive, ls]	182	205	0.012
LRR [sensitive, ls]	182	205	0.32
LRR [sensitive, ls]	206	229	0.091
LRR [sensitive, ls]	206	229	2.4
LRR [sensitive, ls]	230	253	0.0025
LRR [sensitive, ls]	230	253	0.067

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	12	260	7e-33
FLS2 [A.thaliana]	15	246	5e-27
CLV2 [A. thaliana]	21	259	5e-16
CLV2 [A. thaliana]	78	253	5e-17
FLS2 [A.thaliana]	79	249	6e-20
CLV2 [A. thaliana]	86	251	4e-19
FLS2 [A.thaliana]	86	249	6e-17
Cf-9 [L. pimpinellifolium]	87	247	3e-15
CLV2 [A. thaliana]	89	246	1e-15
Cf-9 [L. pimpinellifolium]	90	249	2e-15
Cf-9 [L. pimpinellifolium]	90	289	5e-15
CLV2 [A. thaliana]	90	252	3e-19
CLV2 [A. thaliana]	90	254	2e-17
FLS2 [A.thaliana]	90	261	4e-25
FLS2 [A.thaliana]	90	257	2e-22
FLS2 [A.thaliana]	90	277	3e-21
Xa21 [O. sativa]	90	522	9e-30
FLS2 [A.thaliana]	94	252	2e-23
FLS2 [A.thaliana]	97	252	4e-21
FLS2 [A.thaliana]	97	245	4e-19
FLS2 [A.thaliana]	97	249	3e-18
Xa21 [O. sativa]	104	254	2e-16
Cf-9 [L. pimpinellifolium]	111	245	2e-17
Cf-9 [L. pimpinellifolium]	111	254	5e-15
FLS2 [A.thaliana]	114	698	2e-43
CLV2 [A. thaliana]	123	254	3e-12
Rpg1 [Hordeum vulgare]	408	698	2e-17
Pto [L. esculentum]	413	698	7e-36
Rpg1 [Hordeum vulgare]	416	698	1e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	9	28	in -> out
putative TM domain	96	118	out -> in
putative TM domain	332	354	in -> out

Report for 3508.m00229

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)