Report for 3509.m00212

 > 3509.m00212, length: 576, copies: 1 

MGAVGVEAGVFDTVDGLVGEVMRLHRSLPARPAVEEVEAAEALAAAADREERARADAVARLRRSPAVPDELLCVA

QEMHRALAGFQCREQKRDAARLLELEALHTLFDDLIQRASQCLPSTSTRAAPRIAAPAAATTTTSTAAAGSSSSS

AVGNAERHASSGTNGFTASRVAGTSTSTGRVSMDDSYVRKAKAAMWDGGAAATNSHLPRGPVEANSVAVRADGNY

GDDNEKLSLIKLASMIEVSAKKGARDLNLQGKLMAQIEWLPDSIGKLTGLVTLDISENRLLALPDAIGKLFSLAK

LDIHANRISQLPESIGDLRSLIYLNMRGNQLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLTRLKKLIVETN

DLDELPYTIGHCVSLVELQAGYNHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIP

ENFCFATSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPLQVPPRDIA

LKGAQAVVQYMSDASKRTTKSEPMKPKKTWVHFCFFSRPNKRKHDRIDNAT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	274	296	2.7
LRR [Pfam ls]	297	319	0.63
LRR [Pfam ls]	320	342	0.29
LRR [Pfam ls]	343	365	0.0087
LRR [Pfam ls]	389	411	6
LRR [Pfam ls]	435	457	0.18
LRR [Pfam ls]	483	505	0.0027

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	274	296	0.1
LRR [sensitive, ls]	274	296	2.7
LRR [sensitive, ls]	297	319	0.024
LRR [sensitive, ls]	297	319	0.63
LRR [sensitive, ls]	320	342	0.011
LRR [sensitive, ls]	320	342	0.29
LRR [sensitive, ls]	343	365	0.00033
LRR [sensitive, ls]	343	365	0.0087
LRR [sensitive, ls]	366	388	2.4
LRR [sensitive, ls]	366	388	63
LRR [sensitive, ls]	389	411	0.23
LRR [sensitive, ls]	389	411	6
LRR [sensitive, ls]	412	434	0.62
LRR [sensitive, ls]	412	434	16
LRR [sensitive, ls]	435	457	0.0067
LRR [sensitive, ls]	435	457	0.18
LRR [sensitive, ls]	458	482	0.89
LRR [sensitive, ls]	458	482	24
LRR [sensitive, ls]	483	505	0.0001
LRR [sensitive, ls]	483	505	0.0027
LRR [sensitive, ls]	506	527	0.85
LRR [sensitive, ls]	506	527	22

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	252	548	3e-16
FLS2 [A.thaliana]	265	520	1e-23
FLS2 [A.thaliana]	265	533	1e-15
FLS2 [A.thaliana]	265	518	6e-12
Xa21 [O. sativa]	265	507	3e-17
FLS2 [A.thaliana]	275	517	3e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3509.m00212

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)