Report for 3540.m00085

 > 3540.m00085, length: 632, copies: 2 

MGRCHTGLACLLTGLARDSGDALYDMKLKLNATGNQLSDWNQNQVNPCTWNSVICDNNYNVVQVFFVCSKLVCLM

TDALLQNIGIYGIHWSSITTNWRASVFECFIFGGSCDEIATVILEETRSWSLPGNKITGGIPEQIGNLSSLTSLD

LEDNLLVGPIPASLGQLSKLQILRLAYNKLSGSIPGSLFQVARYNFSGNNLTCGANFLHPCSSSISYQGSSHGSK

VGIVLGTVVGAIGILIIGAVFIVCNGRRKSHLREVFVDVSGEDDRRIAFGQLKRFAWRELQLATDSFSEKNVLGQ

GGFGKVYKGALPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVA

YRLRDSILEDFNMYLIVFNDAEFKPGEPILDWSARKRVAIGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEP

VVGDFGLAKLVDVQKTSVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLL

LDHVKKLQREGQLGAIVDRNLSSNYDGQEVEMMIQIALLCTQASPEDRPSMSEVVRMLEGEGLAERWEEWQQVEV

TRRQDYERMQQRFDWGEDSIFNQEAIELSAGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	145	168	0.076
LRR [Pfam ls]	169	193	0.023
Ser/Thr pkinase [Pfam fs]	292	508	5.3e-42
Ser/Thr pkinase [Pfam ls]	292	585	4.7e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	145	168	0.0024
LRR [sensitive, ls]	145	168	0.076
LRR [sensitive, ls]	169	193	0.00074
LRR [sensitive, ls]	169	193	0.023

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	19	223	3e-12
FLS2 [A.thaliana]	123	198	2e-11
FLS2 [A.thaliana]	124	594	5e-57
Xa21 [O. sativa]	127	374	7e-22
Rpg1 [Hordeum vulgare]	278	591	3e-37
Pto [L. esculentum]	279	584	4e-48
Rpg1 [Hordeum vulgare]	285	590	3e-26

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	226	248	in -> out

Report for 3540.m00085

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)