Report for 3599.m00107

 > 3599.m00107, length: 918, copies: 2 

MATPSDAATIIWSTELELAPLIAMVRNRDYFAGARFHVLRGACEHLAHVRDCVRTRARVAARRGRRLATAAAWTE

EAEIYLLRFGELRSAHGRIPRLIFWDLLGCYRVSKVASLMMPQVKRLCEEGGRIVRRSKLPQPMEISTGFASRDR

TLRAAIERVRTIQPNGIVAIWGRAGLGKTYLLKLVEEYFSRDDTFDLVLRIASPRDSSVAKVQSEIAKKLMLANC

DGMQHRARIFDFLKERNFLLLLDCVWQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHVCDQMNVEVENRIEVHC

LDHTESWEIFKQNADLDYLGHKHVYLPRNISAELLGSPLELVTIGKAMHNKKDAIYWQNALHYLTESCLRDTQWS

GSEEATFFRLKLAYDSLTGILKDCFKLCSLWPEGHIFNQRKLVDFWIGSGLIQGDDIEASYNEGFSHITTLQEFC

LLEPAEDGEAVQMQSTIRDFALWVVHSQGEDKNKWRIQTKENWGLAEQVLLVGLKITELPRIPSNQKTLEVLILQ

HNYLEDGSFGNFPSLLSLQYLDLSFNKLSNIPVEICMQVNLRYLNLSNNRIKTVPVELGCLTRLRHLHLRNNPNL

VIPNGILPKLQNLEVLDVCSFNLLQCSSYEAPINELVRMDKLQSLGITVRSETSFQGISKTTLPIRSLSIVIYNH

EDGYETHVSSENSCINPERQTNLFELGIYTRQKTIVLDSIHSMWNVQHVEKAYLHGYFVDRIICQKLHTGDIFAK

LRRLDIVRCSRLNHISWIIHLPLLEDLLLFSCSTLHQIIATAQDGVVKTNQEKENPSVNNTFPSLKRMTLIEAGA

LVRICSPFFSFPSLECLQISACPLLNKLPFLTVPSKLKCIRGENEWWDGLEWEDQDLEPSLELYFHGLSAEDQLS

ELYLFNSLEVEWASIFTP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	124	432	7.6e-20
NB-ARC [Pfam fs]	166	432	1.9e-23
LRR [Pfam ls]	518	541	2.7
LRR [Pfam ls]	542	563	0.2
LRR [Pfam fs]	565	587	8.6e-06
LRR [Pfam ls]	565	587	0.00014
LRR [Pfam ls]	588	614	1.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	518	541	0.25
LRR [sensitive, ls]	518	541	2.7
LRR [sensitive, ls]	542	563	0.018
LRR [sensitive, ls]	542	563	0.2
LRR [sensitive, ls]	565	587	1.3e-05
LRR [sensitive, ls]	565	587	0.00014
LRR [sensitive, ls]	588	614	0.17
LRR [sensitive, ls]	588	614	1.9
LRR [sensitive, ls]	750	772	1
LRR [sensitive, ls]	750	772	11
LRR [sensitive, ls]	838	860	4.8
LRR [sensitive, ls]	838	860	52

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	58	883	3e-70
RPM1 [A. thaliana]	127	616	5e-17
Xa1 [Oryza sativa]	133	866	7e-18
I2 [L. esculentum]	167	851	9e-22
Mla1 [Hordeum vulgare].	168	650	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3599.m00107

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)