Report for 3643.m00078

 > 3643.m00078, length: 880, copies: 1 

MRIEGKIDRLIKDRHIVDPIMRFNREEIRERPKTSSLIDDSSVYGREEDKEVIVNMLLTTNNSNHVNLSILPIVG

MGGVGKTTLTQLVYNDVRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRF

LLVLDDVWNEDPDRWDRYRCALVAGAKGSKIMVTTRNENVGKLVGGLTPYYLKQLSYNDCWHLFRSYAFADGDSS

AHPNLEMIGKEIVHKLKGLPLAARALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRC

FAFCSVFHKDYVFEKDILVQIWMAVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSI

DECMRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDL

NRQEITELPESVGKLKMLRYLNLSGTVVRKLPSSIARTELITGIARIGKLTCLQKLEEFVVHKDKGYKVSELKAM

NKIGGHICIKNLESVSSAEEADEALLTLGQLPLLKVIIIGGFPTIIKIGDEFSGSSEVKGFPSLKELVFEDTPNL

ERWTSTQDGEFLPFLRELQVLDCPKVTELPLLPSTLVELKISEAGFSVLPEVHAPRFLPSLTRLQIHKCPNLTSL

QQGLLSQQLSALQQLTITNCPELIHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPRMIEDLRITSCSNIINP

LLDELNELFALKNLVIADCVSLNTFPEKLPATLKKLEIFNCSNLASLPACLQEASCLKTMTILNCVSIKCLPAHG

LPLSLEELYIKECPFLAERCQENSGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	26	333	2.5e-90
NB-ARC [Pfam ls]	26	333	7e-91
LRR [Pfam ls]	444	466	2.9

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	444	466	0.11
LRR [sensitive, ls]	444	466	2.9
LRR [sensitive, ls]	467	489	0.5
LRR [sensitive, ls]	467	489	14
LRR [sensitive, ls]	635	656	2.5
LRR [sensitive, ls]	635	656	69
LRR [sensitive, ls]	660	684	0.41
LRR [sensitive, ls]	660	684	11
LRR [sensitive, ls]	686	710	0.78
LRR [sensitive, ls]	686	710	21
LRR [sensitive, ls]	711	740	1.9
LRR [sensitive, ls]	711	740	52
LRR [sensitive, ls]	760	780	2.5
LRR [sensitive, ls]	760	780	66
LRR [sensitive, ls]	782	802	0.75
LRR [sensitive, ls]	782	802	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	16	564	7e-53
I2 [L. esculentum]	23	839	1e-102
M [L. usitatissimum]	33	788	3e-14
Xa1 [Oryza sativa]	34	837	6e-86
Pi-ta [Oryza sativa]	38	485	2e-32
Pib [Oryza sativa].	39	489	2e-38
RPS2 [A. thaliana]	42	716	7e-35
Mla1 [Hordeum vulgare].	43	491	5e-35
N [N. glutinosa]	70	798	4e-16
RPP5 [A. thaliana]	73	841	5e-11
Xa1 [Oryza sativa]	463	846	6e-16
I2 [L. esculentum]	610	865	8e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3643.m00078

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)