Report for 3649.m00209

 > 3649.m00209, length: 1104, copies: 1 

MAVMETVEKIISTGINIHGATNLEDDLSCLRASLPNARLVINRGEWGRFKNKDLAVLLTQLKDTTYDTEDLLRKF

DDQVLRQKMEDTDRSRAGKFFSSSLYRAKNLICGSKTRIKDAQDKLDKAVDDLERALKPLGLKMEKVQHMPETSS

VIGVPQVFGRDKERDLVIEKLASKAKQLKRESIRARPRLAQAKFVSNVSVLPIVSIGGVGKTTLAQFIYNDPRVE

AHFGKRIWVCISDLFNKKRITKEIIESITRKEYKSSNSLDALQVELRKQLRRRKFLLVLDDMWPNAKDEWETFFA

PLRYGFEGSMILVTTRSPDVANLVASNNCNPFRIEGLDRDIFWEFFKKCAFGKQCPESYPQLHDIGRSIASRLCG

SPLAAKTIGRLLNMELTVQHWKTVQNKELWELPNRDNDILPALQLSYLHLPQELKSCFAFCSMFPKGYSFERDEI

VGMWVAQGFVAPEGSMRLEDIGIRYLDDLRGRFLLQTDTNCLDQSRYVMHDLIHDMAQSISVDKCFLMQDLSYQN

QRRMPHAVRYMSVEVDSESLSQTRDIQYLNKLHSLKFGTILMFEITWFNQLSNILFLSLKGCMLVRLPESIGELH

SLRYLDISRSHVQELPEKLWCLYCLQVLDASSSSLEVISPDVTKLINLRRLALPMGCSPKLSEISGLGNMSLLRN

LIHFTVGIGNGRKISELKGMNQLSGTLTISSIYNVKSKEEAVEARLIDKQYLQALVLLWRDQPVPRVMNDDNGVA

EGSPPWSSPSTRRRLSGSSAKPDGHKDGGGATLPSRGCPAAGDTGGFSAVADHRRWRPDGRRSGSAHTGCGSAFP

GAKSSLPAVRSGLGDPNDGGPRGDGGKRRRTVVERWQAAGGWRDGRERPAGSWATAATATLLGPTRYGGVAQETH

GDDGNSRQLAGGAVPAGWPAGRRHGPGEGGDRGCSRRWLRGRETHGDGGDSGQPAGGVVASWLAGGGGGSAHRGA

AEVAAVRGGAAEVAVRHDKALLAWRRWPAQREERPVEVQPVAVRGDWPVGGTGAVMPMRWRKFRWRWSNGASVVD

RQAVDGGRKPSPALAGSATMAFKRHSPPEGVVGPSQPLKCGCQVKARSRFSLRP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	140	465	1.1e-65
NB-ARC [Pfam fs]	196	465	1.2e-65
LRR [Pfam ls]	601	620	1.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	578	600	0.38
LRR [sensitive, ls]	578	600	10
LRR [sensitive, ls]	601	620	0.055
LRR [sensitive, ls]	601	620	1.5
LRR [sensitive, ls]	624	647	0.27
LRR [sensitive, ls]	624	647	7.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	27	739	1e-88
Mla1 [Hordeum vulgare].	60	677	1e-29
Pi-ta [Oryza sativa]	60	655	6e-26
Xa1 [Oryza sativa]	113	736	2e-84
L6 [L. usitatissimum]	144	589	3e-14
M [L. usitatissimum]	144	439	5e-12
N [N. glutinosa]	195	624	2e-12
Pib [Oryza sativa].	198	674	3e-29
RPM1 [A. thaliana]	200	651	1e-43
RPS2 [A. thaliana]	200	629	2e-23

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	109	133

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3649.m00209

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)