Report for 3687.m00239

 > 3687.m00239, length: 932, copies: 1 

MAEIAVSLVGSLIAGISTLVEKEATLLQSVPENTRGRQTSRQMLPFYSSMAHPLSLLFIVIEILKIEHNYRLDSF

LLSRSPAKPFVKDELQTIGAFLGVVENMKEDSPKYQMARVWAEQVKDLAYDMEDCLEEQITALTTRNSSWSQYVT

NYRALRPFAAKLSDLKSRIVEVSERNMRYHLVIADQVIDNHMNFMVALNKVLSRSVEGTTDNWTQNVVTWAEAPE

ESASNDKTCAPKVTAVVGMFGSGSTRVSEIYKRHKADKKYDSYVWIELSQDVNVTKVFKDMMKQLFDDSSSQPEY

TGEDELAHGIQHELKQKRFLVVFDELWTTHAWHSIKKALPHVSRSGSQVIVTTEIVHVAKGCTESDDHVYWVQLL

SKQESFERFKNLILVTENSKMTHEDREDFEDLDLKELDRLKILRKCRGLELAIGTVANNHPMLKDIWKVMIQRYK

DLPPYLKPCFLYLSIFPENSDINVETIIDRWLAEGLVRDRTGMSPRTVAKWYLLWLIDRSMIMVSNLRKNRSFKT

CWIHPMMRDILVMISQEEKFSITVGPRKSSSLLVKRLPHVTLDGGSGRKLARYVDLSGIRSLTVFNEPSESIAAL

ICSSKLRAVRILDLSNANEFKITRRDIERVGELCHLRYLNLYKTNICELPSSIGMLPFLQLLNVRKTRITKLPNE

VTQLGKLQLLRASRRTEDSCHNRRNRCCIDSALTVPKGIENLQDIERLDIMDIKDNSGSEIEALGKLARLEHLGL

AGITIGNSKQVSKTLKRISSSLTYLYLGACQSDGTLACLPISEKKRKKPLEFPRLQTIKLDGHIGKMPYWISNSW

TLAVIKLYRTNLQQNHIMSLEKLPCLVTLALLDNSYISETLVFYDKAFRELKTLEIIRLTKLKTVIFTEEAVPQL

RSLAIRCCELRLKGKNNLKLRKVDLDDGVEEV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	201	492	2.1e-17
NB-ARC [Pfam fs]	236	386	1.6e-17
NB-ARC [Pfam fs]	449	492	1.5e-13
LRR [Pfam ls]	635	657	0.42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	635	657	0.016
LRR [sensitive, ls]	635	657	0.42
LRR [sensitive, ls]	658	680	0.49
LRR [sensitive, ls]	658	680	13
LRR [sensitive, ls]	826	849	0.97
LRR [sensitive, ls]	826	849	26

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	71	748	6e-36
I2 [L. esculentum]	86	913	4e-26
RPM1 [A. thaliana]	86	908	8e-60
Mla1 [Hordeum vulgare].	89	682	2e-46
Pib [Oryza sativa].	105	420	7e-14
RPS2 [A. thaliana]	161	908	6e-17
Xa1 [Oryza sativa]	205	772	3e-13
Pib [Oryza sativa].	230	906	7e-54

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3687.m00239

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)