Report for 3699.m00141

 > 3699.m00141, length: 574, copies: 1 

MPNASPLHHLASLLLLALALAPRPAAPAATDRAALLAFRAFLPAALPRGARLPAAPLALLRRVRALDLSANALSG

ELPCSLPRSLLDLDLSRNALSGAVPTCFPASLPALRALNLSANALRFPLSPRLSFPASLAALDLSRNALTGAVPP

RVVADPDASGLLLLDLSHNRFSGEIPVGITAIRSLQGLFLADNQLSGEIPTGIGNLTYLQALDLSRNRLSGVVPA

GLAGCFQLLYLRLGGNHLSGALRPELDALDSLKVLDLSNNRISGEIPLPLAGCRSLEVVNLSGNKITGELSGAVA

KWQSLRFLSLAGNQLSGQLPDWMFSFPTLQWIDLSGNRFVGFIPDGGFNVSAVLNGGGSGQGSPSEAVLPPQLFV

SVSTDMAGRQLELGYDLQAATGIDLSRNELRGEIPDGLVAMKGLEYLNLSCNYLDGQIPSGIGGMGKLRTLDFSH

NELSGVVPPEIAAMTELEVLNLSYNSLSGPLPTTDGLQKFPGALAGNPGICSGEGCSAHSRMPEGKMAGSNRHGW

LGGWHGENGWVSLGAFCISTMTSFYVSLATLLCSRKARNFVFRPGRMEY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	62	82	8.8
LRR [Pfam ls]	84	108	5.8
LRR [Pfam ls]	133	157	8.1
LRR [Pfam ls]	160	183	4.6
LRR [Pfam ls]	184	207	0.27
LRR [Pfam ls]	208	231	4.6
LRR [Pfam ls]	232	255	8.6
LRR [Pfam ls]	256	279	0.015
LRR [Pfam ls]	280	303	0.82
LRR [Pfam ls]	304	327	1.4
LRR [Pfam ls]	328	352	2
LRR [Pfam ls]	418	441	0.33
LRR [Pfam ls]	442	465	0.021
LRR [Pfam ls]	466	488	0.68

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	62	82	0.42
LRR [sensitive, ls]	62	82	8.8
LRR [sensitive, ls]	84	108	0.28
LRR [sensitive, ls]	84	108	5.8
LRR [sensitive, ls]	109	129	5.6
LRR [sensitive, ls]	109	129	120
LRR [sensitive, ls]	133	157	0.39
LRR [sensitive, ls]	133	157	8.1
LRR [sensitive, ls]	160	183	0.22
LRR [sensitive, ls]	160	183	4.6
LRR [sensitive, ls]	184	207	0.013
LRR [sensitive, ls]	184	207	0.27
LRR [sensitive, ls]	208	231	0.22
LRR [sensitive, ls]	208	231	4.6
LRR [sensitive, ls]	232	255	0.41
LRR [sensitive, ls]	232	255	8.6
LRR [sensitive, ls]	256	279	0.00074
LRR [sensitive, ls]	256	279	0.015
LRR [sensitive, ls]	280	303	0.04
LRR [sensitive, ls]	280	303	0.82
LRR [sensitive, ls]	304	327	0.07
LRR [sensitive, ls]	304	327	1.4
LRR [sensitive, ls]	328	352	0.098
LRR [sensitive, ls]	328	352	2
LRR [sensitive, ls]	394	417	1.5
LRR [sensitive, ls]	394	417	32
LRR [sensitive, ls]	418	441	0.016
LRR [sensitive, ls]	418	441	0.33
LRR [sensitive, ls]	442	465	0.001
LRR [sensitive, ls]	442	465	0.021
LRR [sensitive, ls]	466	488	0.033
LRR [sensitive, ls]	466	488	0.68

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	30	482	2e-48
Xa21 [O. sativa]	49	295	3e-24
Cf-9 [L. pimpinellifolium]	53	504	2e-46
CLV2 [A. thaliana]	57	293	2e-13
FLS2 [A.thaliana]	57	482	6e-46
Xa21 [O. sativa]	57	503	1e-42
Cf-9 [L. pimpinellifolium]	60	484	3e-33
CLV2 [A. thaliana]	60	345	6e-26
FLS2 [A.thaliana]	60	337	5e-28
FLS2 [A.thaliana]	60	278	2e-21
Xa21 [O. sativa]	60	280	2e-15
CLV2 [A. thaliana]	62	484	2e-33
Xa21 [O. sativa]	62	482	2e-31
FLS2 [A.thaliana]	63	353	8e-31
CLV2 [A. thaliana]	66	568	1e-116
FLS2 [A.thaliana]	69	484	1e-37
Cf-9 [L. pimpinellifolium]	112	484	1e-20
FLS2 [A.thaliana]	112	482	9e-37
Xa21 [O. sativa]	131	486	8e-34
Xa21 [O. sativa]	132	434	1e-22
FLS2 [A.thaliana]	157	487	2e-29
CLV2 [A. thaliana]	161	487	6e-33
CLV2 [A. thaliana]	284	489	1e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	535	557	out -> in

Report for 3699.m00141

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)