Report for 3707.m00166

 > 3707.m00166, length: 2185, copies: 2 

MWGVRRMDWGGGEMRRRWGSGGMGRRRGAGGGGRRGGSRVLSAAAGDGFGLGESESKKETPETNIIDTEQKRTGA

DTAERGAAARQGDDARASGGEVRRRGVIGVGGGEEESPVGIGVEALVSAAWTATGAAVSISRPSLAAMAHVFRLC

LSSPPSCPEAGAALHAIALGTKHPQFQKQGYNFSPSIILSIPQPPQLDDGWQHSELQQRTAAPQPPPKQRLGGRR

RRRKNSPRPLLSLPATSARRATAAARELIGAPPLPGGNEGSEGDGSSARASGALHSQPATRARRTTVAARIRRES

SSAPSTSGRRQGDGAPRATVAARIQSDGDPDGGERGSRESSRQPVKESNCMAESLLLPVVHGVIGKATDALVQKV

TRMYGVDGDRRKLERQLLAVERLLADAESKSETNPAIKRWMKDLNTADDEADDVLDEFQYEVLHREAMSLKSLGH

KVRSYMTPLEFHFTMRRKLAKVLKKINELVEEMNTFGLLLRDEPQQLSYRQTYSVLPSNELDDIFGRDDDKELLQ

KELQKAVGRRRFLLVLDDVWNEEKKKWEEDLKPLLSSVGGGDGSVILVTTQSQRVASIMGTLEYHNPACLSDDDS

WELFSKKAFSKEVQQQAELVTAGKLIVKKCKGLPLALKTMGVFPKDHEMDKEVLIQLWMANGFIQEDETMGLEQK

GEYVFCNLRMPPNISLLKNLRTLTTFVLDTEPGRGIEELKDLNHLANRLELESYGQAGTGRLGYSESSLIGERGK

MAGERAPDAMSCCSSSTAYSCSYFSPASAIPVRCFGSHASRPAPPADYRVVGRAEEEAHPRDVVKSSKEMAGFQI

CAAREHAYMEGFRVGEPELRLGTGRCVLSWTVGMEHNEAWLNQHSLLAMVLKTRPSVSPGEMLEAIVQHTGINES

NVRVDVTHTEDFLVLFRMLQDRNLVLHCSHEIFVKGVPTSFKLWSRRSWADSSDLKFFTKISLDGLPAHLWEREV

VRNLVNELEGELIESIPANDTRCLGLFAWFKNPNKLPQRLQVEVPKKIGAGGSWRKSSSSSAPPRAPRARPSFTV

NDPMLLHAPDKFYNDDGDDDVTRRNTFDCWAKWFNSAGLWPSDRGGSTRYGGASGSAGGLECQAFDLLPSVIQQP

VRLFNTEEAVSAIVRFGSSATGEDLLPSSPDAAAVVGTRELGTQVPVMVLVSPEVVVDTVEVISPSLPRVFELAV

PGAVEGSSPQGGNSAGEHFRAGGPAPTEVVRGLYLAIPQVAQEQVVPFDRVYSRRKEAGSKLGMLPTQIAVSATQ

EVQSAAAAAQEAILVAADENMCVQVNIFVDAISTPSSSSVLSKPPASVPITKSRCRPVIPVDFKPWRSPRLALQG

SGARHHSISKAQRVTMKNLGIIEEEEEANDEAMEEYVQLFDEPLPPHHFEALAELLHLELAEPEFQALADESVVS

SNALVVCFQESKLEVVDRVTVFELCGPDFDRFEFLPALQTRGGIIVAWKGDLFQGTLVHVGQWSVTVNLDWRQGG

RSWAVTSVYGPQRDDEKLLFSEELSVIKNCCLGEWMIAGDFNLITAAEDKNNTRINRRLMNAFRSKVNDLELKEM

YLFGRRYTWSSEQAIPTLVKLDKLFISTQWEDLFPEAHLQALSSSVQESWGSEVDSSDPFCILYVKMARLSKALG

KWGQRKISSFRLQLQIDINGTLSDPFKPMRGLRQGDPLSPLPFVLKAMSAGLLDKVNHRSRAPNNSLYADDAVIF

FKPVRHEAMLVKAVLDLFSEATDLLPNFSKSAVSPIRYTEEQSSLVQDILHCKLQNLPILYLGLPLSVRKPTKAE

LQPLFDRLAKKVAGWKSKFLSPDGRLCLIKSILMAIPVHFLSVMQLPKWAIKDIERRCRGFLWKVAWRAVSMPVE

FGGLGIRDIELFGKVLRLKWEFNRLEHEDRPWTMANWESDKDVRDIFSSIAQHMDELQQVSLQDGQSDSVLWRFT

ASGAFSVSSAYEFFFYPSVKCPHARSTACRMVAAGASLFSVKDNERVRMSLGSWPSLTKLDVSSSYNKMSTLEVG

TNQGPLENLRSLTLYRLNCFTDVSGFSKIHLGLCKCFAFVEDLSISGCDGLVRWPIEELMSLIHLRSLSIETCRN

LEGKGSSSEDGQLHIPMLPASLEKLCLVYCPRLVALPSKLGNLARLKIMSLQHCYDLKELPDGMDGLISLEELKI

WNCPEIEKFL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	447	669	3.2e-10
NB-ARC [Pfam fs]	518	641	4.9e-32
NB-ARC [Pfam fs]	642	669	1.1e-07

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Reverse transcriptase (RNA-dependent DNA polymerase) [fs]	1668	1691	0.016

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	508	724	2e-18
Xa1 [Oryza sativa]	522	674	3e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	383	408
putative coiled-coil	464	486
putative coiled-coil	1372	1392

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3707.m00166

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)