Report for 3722.m00162

 > 3722.m00162, length: 310, copies: 1 

MGRLKFVKEKTGGARVAVEADAAEPDGQPPRGRHPRRHRGCSRRLYFLDLSGNRLSGGIPATLFCNCTALQYVDL

ANNSLAGDIPYSGECRLPSLRYLLLWSNDLSGLIPPALSNSSLLEWVDFESNYLAGELPPQVFDRLPRLQYLYLS

YNNLSSHGGNTDLAPFFRSLTNCTRLQELELAGNDLGGELPAFVGELSREFRQIHLEDNAITGAIPPSIAGLVNL

TYLNLSNNMLNGSIPPEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLGLVDLSGNRLAGTIPDTFSNLTQLRRL

MLHHNHLSGD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	44	68	0.0012
LRR [Pfam ls]	94	117	0.54
LRR [Pfam ls]	118	142	3.6
LRR [Pfam ls]	143	171	0.0048
LRR [Pfam ls]	175	198	0.81
LRR [Pfam ls]	200	223	3.8
LRR [Pfam ls]	224	247	0.0038
LRR [Pfam ls]	248	271	0.072
LRR [Pfam ls]	272	295	0.063

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	44	68	5.2e-05
LRR [sensitive, ls]	44	68	0.0012
LRR [sensitive, ls]	69	93	0.54
LRR [sensitive, ls]	69	93	13
LRR [sensitive, ls]	94	117	0.023
LRR [sensitive, ls]	94	117	0.54
LRR [sensitive, ls]	118	142	0.16
LRR [sensitive, ls]	118	142	3.6
LRR [sensitive, ls]	143	171	0.00021
LRR [sensitive, ls]	143	171	0.0048
LRR [sensitive, ls]	175	198	0.035
LRR [sensitive, ls]	175	198	0.81
LRR [sensitive, ls]	200	223	0.17
LRR [sensitive, ls]	200	223	3.8
LRR [sensitive, ls]	224	247	0.00016
LRR [sensitive, ls]	224	247	0.0038
LRR [sensitive, ls]	248	271	0.0031
LRR [sensitive, ls]	248	271	0.072
LRR [sensitive, ls]	272	295	0.0027
LRR [sensitive, ls]	272	295	0.063

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	32	309	2e-29
Xa21 [O. sativa]	36	309	2e-23
CLV2 [A. thaliana]	39	309	2e-29
FLS2 [A.thaliana]	39	310	2e-30
FLS2 [A.thaliana]	40	309	2e-29
FLS2 [A.thaliana]	40	309	9e-27
FLS2 [A.thaliana]	40	309	9e-24
Xa21 [O. sativa]	40	309	2e-44
Cf-9 [L. pimpinellifolium]	42	309	3e-20
CLV2 [A. thaliana]	42	298	3e-20
Xa21 [O. sativa]	42	297	3e-27
Cf-9 [L. pimpinellifolium]	43	309	6e-20
Cf-9 [L. pimpinellifolium]	43	293	1e-18
CLV2 [A. thaliana]	43	309	5e-22
CLV2 [A. thaliana]	43	310	5e-22
FLS2 [A.thaliana]	43	309	2e-29
Cf-9 [L. pimpinellifolium]	45	265	8e-16
CLV2 [A. thaliana]	45	310	2e-26
CLV2 [A. thaliana]	45	289	6e-20
FLS2 [A.thaliana]	45	310	1e-27
Cf-9 [L. pimpinellifolium]	48	310	4e-19
Cf-9 [L. pimpinellifolium]	48	310	3e-17
Cf-9 [L. pimpinellifolium]	48	309	4e-13
FLS2 [A.thaliana]	58	309	3e-28
Xa21 [O. sativa]	62	310	5e-24
Xa21 [O. sativa]	98	309	7e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3722.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)