Report for 3730.m00137

 > 3730.m00137, length: 1134, copies: 2 

MGEAAVVGWLVCPVIRIVVDKARSCASDRFRWLNGGVPDALKQLEDELNQLRAEAGCVERCLGGGGGGRGNCELV

RWLRQLKEVVYEADDVLDEFAYRRLAPNDGKVSLLGSSSIGKIGKQLVGKDESVNRLKAVVEKLSSIRANSGRLM

QAAGLTKPGSGEPSSTLLTSDGPVTGSILEDGEVFGRDKEREQLVSWLIGSTPEAEGEDRSAAADDTIPVAAILG

LGGIGKTTLARVLCHDHEVKEAFDLIMWVCPAGNYSKLDLAKQILQSAELPDDTNSFDRLQRRLKEAVSSRRFLL

ILDNVWNKDENENSYRDMWADVLAPLRFGRAGSKIVVTTRKRIVADLLNASKFVWLNGLEFADVWLLFKKFAFDN

NDVDRHPELKEIGEQIAVKLKGLPLAAKVVGGMLKRKPSLTEWKRILKMEIYDNVSSTLELCYQNLQEHIQPCFA

ICSIFPKNWRFNRDKLIKIWMALGFIQFRPDDTKNQLEEDVGKEYFNQLVAQSFFHERKEGRRTYYYIHDLMHDL

ADNVSRIDCARVESVEFEKKDIRIPDTVRHLSVTSDAVMQLKGRAELKRLRTFIILKHSSSSVVPLPDDVLKELK

GLRVLGLDGCDMVELSDKVGQLIHLRYLSLCKTITKLPKSVTKLFLLETLYIPKRCQLEEFPKDMWKLKYLRHLD

INRTNTSKIVGIGKMIHLQGSIEFHVKKEKGHTLEDLNDMNDLRRKLHIKNLDVVASKEEASKAGLSKKQSIKVL

ELEWNSPGKSVPSVDAEVLEGLKPHPDVEEIHIRRYHGNTSPCWLDRKDITFLKYLHLTNCRKWAVLPPLGQLPF

LKVLHLKEMCSLKQIGSEFYGTNPTAFPYLEDLEFDDMPKWVEWTKEEEKYDSVFPRLRKLKLLSCPDLIKVPPF

PQSVRKVSIENTGFVSHLKLSSSSSSKANKVKLETCSAAVLTNGLFHQQQVQEIVDLTLRHCQDVKFEELHALTS

LKRLQISYLEMTDEELGTCLQGLQSLTLLDIVHCSKITTLPQIENPSNLTKFHELNIRQCPQLSSLHSLPSFATL

ETVLIENCSRVTVESFPANFNSLTSLRKLSIMNCTGLESLPSGFPSSLQVVHLIGCKPTLLSQLQNKDGPEWDKI

ASIPMKLIH

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	170	481	3.5e-57
NB-ARC [Pfam ls]	170	481	3e-57
LRR [Pfam ls]	1000	1022	1.6
LRR [Pfam ls]	1075	1099	4.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	601	624	1.5
LRR [sensitive, ls]	601	624	40
LRR [sensitive, ls]	975	999	3
LRR [sensitive, ls]	975	999	80
LRR [sensitive, ls]	1000	1022	0.06
LRR [sensitive, ls]	1000	1022	1.6
LRR [sensitive, ls]	1026	1048	1.2
LRR [sensitive, ls]	1026	1048	33
LRR [sensitive, ls]	1049	1074	1
LRR [sensitive, ls]	1049	1074	28
LRR [sensitive, ls]	1075	1099	0.17
LRR [sensitive, ls]	1075	1099	4.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	63	680	2e-45
I2 [L. esculentum]	77	1106	1e-118
Mla1 [Hordeum vulgare].	77	676	1e-32
Pi-ta [Oryza sativa]	77	693	8e-25
Xa1 [Oryza sativa]	125	1107	4e-89
Pib [Oryza sativa].	180	678	1e-27
RPS2 [A. thaliana]	191	898	4e-26
RPP5 [A. thaliana]	220	1106	2e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	39	60

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3730.m00137

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)