Report for 3843.m00300

 > 3843.m00300, length: 960, copies: 1 

MMMMCAGGAAAIIFLTALSSAASALGVAAAAAAAACVPSERAALLAIKAGFTSDPDGRLASWGAAADCCRWDGVX

CDNATGHVTELRLHNARADIDGGAGLGGEISRSLLGLPRLAYLDLSQNNLIGGDGVSPSPLPRFLGSLCDLRYLN

LSFTGLAGEIPPQLGNLTRLRQLDLSSNVGGLYSGDISWLSGMSSLEYLDMSVVNLNASVGWAGVVSNLPSLRVL

ALSDCGLTAAPSPPARANLTRLQKLDLSTNVINTSSANSWFWDVPTLTYLDLSGNALSGVFPDALGNMTNLRVLN

LQGNDMVGMIPATLQRLCGLQVVDLTVNSVNGDMAEFMRRLPRCVFGKLQVLQLSAVNMSGHLPKWIGEMSELTI

LDLSFNKLSGEIPLGIGSLSNLTRLFLHNNLLNGSLSEEHFADLVSLEWIDLSLNNLSMEIKPSWKPPCKLVYAY

FPDVQMGPHFPAWIKHQPSIKYLDISNAGIVDELPPWFWKSYSDAVYLNISVNQISGVLPPSLKFMRSALAIYLG

SNNLTGSVPLLPEKLLVLDLSRNSLSGPFPQEFGAPELVELDVSSNMISGIVPETLCRFPNLLHLDLSNNNLTGH

LPRCRNISSDGLGLITLILYRNNFTGEFPVFLKHCKSMTFLDLAQNMFSGIVPEWIGRKLPSLTHLRMKSNRFSG

SIPTQLTELPDLQFLDLADNRLSGSIPPSLANMTGMTQNHLPLALNPLTGYGASGNDRIVDSLPMVTKGQDRSYT

SGVIYMVSLDLSDNVLDGSIPDELSSLTGLVNLNLSMNRLTGTIPRKIGALQKLESLDLSINVLSGEIPSSLSDL

TSLSQLNLSYNNLSGRIPSGNQLQALANPAYIYIGNAGLCGPPLQKNCSSEKNRTSQPDLHEGKGLSDTMSFYLG

LALGFVVGLWMVFCSLLFVKTWRIVYFQAINKAYDTLYVFIGVRWAKFRVDKTTTTSVPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	114	137	7.6
LRR [Pfam ls]	145	168	0.1
LRR [Pfam fs]	271	294	3.3e-05
LRR [Pfam ls]	271	294	0.00054
LRR [Pfam ls]	295	318	0.33
LRR [Pfam ls]	372	395	0.049
LRR [Pfam ls]	396	420	0.24
LRR [Pfam ls]	562	585	0.041
LRR [Pfam ls]	586	608	0.041
LRR [Pfam ls]	613	636	5.7
LRR [Pfam ls]	662	685	6.3
LRR [Pfam ls]	686	709	0.0053
LRR [Pfam ls]	755	778	0.99
LRR [Pfam ls]	803	826	0.037
LRR [Pfam ls]	827	849	0.56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	114	137	0.37
LRR [sensitive, ls]	114	137	7.6
LRR [sensitive, ls]	145	168	0.0049
LRR [sensitive, ls]	145	168	0.1
LRR [sensitive, ls]	169	194	1.2
LRR [sensitive, ls]	169	194	26
LRR [sensitive, ls]	221	245	1.8
LRR [sensitive, ls]	221	245	37
LRR [sensitive, ls]	246	270	0.74
LRR [sensitive, ls]	246	270	15
LRR [sensitive, ls]	271	294	2.6e-05
LRR [sensitive, ls]	271	294	0.00054
LRR [sensitive, ls]	295	318	0.016
LRR [sensitive, ls]	295	318	0.33
LRR [sensitive, ls]	348	371	2.8
LRR [sensitive, ls]	348	371	59
LRR [sensitive, ls]	372	395	0.0023
LRR [sensitive, ls]	372	395	0.049
LRR [sensitive, ls]	396	420	0.012
LRR [sensitive, ls]	396	420	0.24
LRR [sensitive, ls]	421	441	1.7
LRR [sensitive, ls]	421	441	34
LRR [sensitive, ls]	469	493	0.62
LRR [sensitive, ls]	469	493	13
LRR [sensitive, ls]	494	517	1.7
LRR [sensitive, ls]	494	517	36
LRR [sensitive, ls]	539	561	0.92
LRR [sensitive, ls]	539	561	19
LRR [sensitive, ls]	562	585	0.002
LRR [sensitive, ls]	562	585	0.041
LRR [sensitive, ls]	586	608	0.002
LRR [sensitive, ls]	586	608	0.041
LRR [sensitive, ls]	613	636	0.27
LRR [sensitive, ls]	613	636	5.7
LRR [sensitive, ls]	637	660	0.95
LRR [sensitive, ls]	637	660	20
LRR [sensitive, ls]	662	685	0.31
LRR [sensitive, ls]	662	685	6.3
LRR [sensitive, ls]	686	709	0.00025
LRR [sensitive, ls]	686	709	0.0053
LRR [sensitive, ls]	755	778	0.048
LRR [sensitive, ls]	755	778	0.99
LRR [sensitive, ls]	779	802	0.44
LRR [sensitive, ls]	779	802	9.1
LRR [sensitive, ls]	803	826	0.0018
LRR [sensitive, ls]	803	826	0.037
LRR [sensitive, ls]	827	849	0.027
LRR [sensitive, ls]	827	849	0.56

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	12	653	3e-48
FLS2 [A.thaliana]	31	866	9e-80
Cf-9 [L. pimpinellifolium]	36	913	1e-76
CLV2 [A. thaliana]	38	712	2e-48
Xa21 [O. sativa]	180	879	2e-50
CLV2 [A. thaliana]	194	915	6e-57
FLS2 [A.thaliana]	491	875	4e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out
putative TM domain	897	919	out -> in

Report for 3843.m00300

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)