Report for 3865.m00127

 > 3865.m00127, length: 947, copies: 2 

MASATFGAMDSVLSKLTDLLTFEYKLLEEVKRDIVFVKSELESMHAFLKKMSEVEDELDEQVKCWRKEVRELSYD

IEDHIDEFAVHLKDEPGCELHGIPSFISQIVKSIASIRNHYQIAKEMRGIRAFVGEASRRHKRYKVDDTISKPSK

VTVDPRLPALYKDASDLVGIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGLGKTTLANQVYHNLEGIFESRAF

VTVSQKPDMMKILREILSGIGYNGLEAAWDEGKLIHEVRKYLRFVRYCVVLDDIWSISVWEILRCALPENNRGSR

IVVTTRITDIARACCAPRHCDIYHLKPLDNTSSRRLFFKRICGSEDSLPSHVKGVAEKILKKCGGMPLAIISIAS

LLATKAQTKEQWESVNISLESGLDKHIGFEGMNWILSLSYNHLPQHLKTCMLYLCLFPEDYIISKDILVQQWIAE

GFVFPEHGRNLEEAGYYYFNELINRSMAQPVDIEYNGEAMSCRVHDMIRSLIISKSNQENFVTIFSTSEAASVMT

PGKIRRLSVQYIDEECGMVPMLPTLSHARSFSIFGHCNKMPSLTEFKVLRVLEMDDCWKLENHHLKHIGRLSQLK

YLGLRRTPISELPEQIGELKYLETLDLRLSHLTELPAAVVRLRRLVHLFFDSNIKLPDGIGEMQSLQQLSSFDVC

RSSITSLQELSRLSNLRVLVMSWRSFGMIGDVRSYNNNLVSSLGRLGTCSLRSIYIQGYNSSLQDFSLDLWCPPP

SLLQKFVANKCLSVIPNWLGSLINLSYINVDVLRAAQRDLDILGELPNLLFLRLGSETAPQERLIIRDQCFEHLK

EFKFICLLTEGLEFQVGAMPRLERLCFQFVALEIIYATGGFDFGIQHLLSLKEAFVKIDCFAAWAGVGNAAEAAI

RNSARALPNNPLLNIERFSANDDDMEEDFGFVVLGRRMQQRMPQPET

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	152	311	5.5e-31
NB-ARC [Pfam ls]	152	458	2.6e-57
NB-ARC [Pfam fs]	355	458	1.6e-26
LRR [Pfam ls]	598	620	3.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	573	597	4.6
LRR [sensitive, ls]	573	597	96
LRR [sensitive, ls]	598	620	0.17
LRR [sensitive, ls]	598	620	3.6
LRR [sensitive, ls]	621	643	1.4
LRR [sensitive, ls]	621	643	29
LRR [sensitive, ls]	644	667	6.4
LRR [sensitive, ls]	644	667	130
LRR [sensitive, ls]	668	689	2.1
LRR [sensitive, ls]	668	689	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	878	1e-67
Mla1 [Hordeum vulgare].	7	928	1e-149
Pi-ta [Oryza sativa]	41	695	1e-95
Pib [Oryza sativa].	44	356	6e-18
RPS2 [A. thaliana]	116	697	8e-30
I2 [L. esculentum]	163	802	4e-43
Pib [Oryza sativa].	163	648	3e-63
Xa1 [Oryza sativa]	185	693	3e-37
Pi-ta [Oryza sativa]	765	934	1e-13

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3865.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)