Report for 3883.m00088

 > 3883.m00088, length: 998, copies: 2 

METAVLSAVLRTLGPKLYAFLRDGHDLLRRDLERDVHYIRNELAMIAAAIEEHDRRPPPAAGDVRSAWIRGVRDL

ACDMEDCVDRFVHRATGHGLASMGARAKFAAVIQELRRKSEELSRLRASYAAAAGEPSCWVATGSSALTLPASSS

EAHTLASDIVGMDGPRDEILELIGETQGQLKVISIVGFGGLGKTLLARQIYESDAVAAQFHPRIWVRAAGKNAED

VLMDILQQLGMPVHHCHASNLVVNLRNCLESKRFFVVIDDMQREYWNSSFRNAFPSDTGLSSIVIVTTAIQSIAN

ACSSRNSHVYVMRTLNEEHSRQLFLKEASWKDYPPGSEAILKKCDGLPLALVTTAQFLQSRCQQQPLGCAKLCDN

LGKHLVTEDTLARMKRVLVHHYSSLPGHVIKACLLYLGIFPSGHPVRRKTLIRRWSAEGFVGADHHRSSLDVAID

SFEELVNRSIIQPVDVSSNTEVKTCQTHGMMLEFILHKSICDNFITFLYGQARLPDKIRCVSIQQNSGSKTRVDS

DIDLSLVRSLTIFGKAHKSFLNFSRYKLLRVLDLEECDELEDEHLKKICKRLLLKYLSLGRGITVLPKEIAKLKF

LETLDLRRTVIKFLPIQVLELPCLIHLFGVFKIQDADQQMRKLKSFLTEKSKLETLAGFVTDRCQTFPQLMKHMT

NLAKVKIWCENTADASSSSNSDVHLSEAIQEFIQRGTDVNDVRSLSLDVGECSQEFLNFSLGDSCYLSSLKLKGN

KICRLPPFVTSLAVLTDLCLSSSDRLSSDVLAALSNVRALRYLKLIARHLDRFVIERGDLQSLRRLHIVVVSMTT

MSKQQPEIQEGALPNLESFHLLCKDLDGPCGHGGIRIDSLGLGCLREIVLDDGVRETAKEQWKDAARRHPKRPKV

VFVGAGDVVDRRRVGAAAAAAPAAGESNSAMAPAAVASVVAAGDVKRPAREESDISAALASLPAKMARLLGAASI

HQSSGTQGELSCGGNGASQRHFS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	144	441	5.1e-30
NB-ARC [Pfam fs]	157	441	2.9e-31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	5	627	3e-69
RPM1 [A. thaliana]	23	852	6e-36
Pi-ta [Oryza sativa]	54	627	2e-62
Pib [Oryza sativa].	64	329	8e-12
Xa1 [Oryza sativa]	108	606	2e-17
I2 [L. esculentum]	157	846	3e-29
Pib [Oryza sativa].	157	627	5e-56
RPS2 [A. thaliana]	159	609	9e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3883.m00088

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)