Report for 3883.m00090

 > 3883.m00090, length: 885, copies: 2 

MEAPPLAAPICASQGAMGSLLGKMEELLVAPDGSRLPKGVKDRMLLLGGDLGVVAAYLADLSELEDPPPTAKRWM

REVRELSYDIEDYIDEFCAAPRPGRRANTMARFVCRIGRVKVARLPKRLKRHQQMGKMVSQFRIYVEEAIERHGR

YGLDCCDHRRRYVSFGPMLPSRPYGEEDAQLVIDGRVSEFIERLANDEDQKLKVVSVVGSSGIGKTTLAKLLYNR

IGGQFDCRAFVRISRKPDMKRVFREMFFQLQRKQPPDDYKELALIDSIREYLQDRRYLIIIDDLWAASVWDLINQ

AFPETCLLYLNMYPEGYKICKDDVVEKWVAEGFIDQIEGRDLEKVAGSYFDELIDRRFLQPSRLNYNNEVSTCTI

HDEVRDLIAYKSVEENFVLVLDFYRKDVELSDKVRRLSVHFGDIKYAKIPTNIRTSEVRSLTFFGLCKCMPSLTE

FKLLRVLNLQLSGHVGDELLDLSGISELFQLRYLKIACDIRTELPSQMRGLKYLETLQMDTTLTAVPWDIIFLPC

LLHLHLRFDMNLIDLMGHMTPPSELGSSSSNSSPSGGIISNLNNVRDIHLTFCALPSKHLERNMEILGSLLGRLG

NLKNLTLVSSSSQKKIAASGASEVTILWDNLAPPPLLQRFEWLLHSCIFYRVPKWIGELGNLCILKIAVRELVKN

SVDILRGLPALMALSLNVHRASVENIFFDKVGFSVLKYFKYNCSVPWLKFEAGAMPNLRKLKLGFSALGDLYGTA

PIRIGHLLGLKEISVKIHGASVDAESALTSAVSNHPSNPRINVQLVDKIFYGDRVTKEKDHGSEEEQNAIMSANF

DEYHQTQDKESSDANKQVGSIVPLPREQEHGILEHDEYAPKDPDKYKQSDIRNISILYIN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	164	303	6.1e-22
NB-ARC [Pfam ls]	164	425	1.1e-08
NB-ARC [Pfam fs]	306	339	9.4e-06

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	6	304	2e-41
Mla1 [Hordeum vulgare].	15	302	2e-32
Pib [Oryza sativa].	53	302	2e-15
RPM1 [A. thaliana]	74	304	3e-13
I2 [L. esculentum]	172	290	1e-10
Mla1 [Hordeum vulgare].	304	818	5e-36
Pib [Oryza sativa].	304	530	1e-15
Pi-ta [Oryza sativa]	304	543	1e-53
RPM1 [A. thaliana]	306	690	3e-14
Pi-ta [Oryza sativa]	645	812	9e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3883.m00090

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)