Report for 3886.m00151

 > 3886.m00151, length: 648, copies: 1 

MRRRKRRHGAGAGGEAGDWGGSLGRFKRTRGGSRRKESAREGPTAADCGGGHRRRRKGENSPGQQESNSPGKELL

HGSGNSFQATGGDEGGGALTDERGAASAAGAARRATGESGSVGSSPTRETASAARMESRQGGRDGGAAWHRGCAV

GVEGRERWRWGSPELLVTRPRMHRLLRCSAADGDGESGASSNNGAAVMEVRRQRRGMPATLVTLDLGYNALDDVI

TAEHLSHLNRLKHIDLSYTSLKIQIVSEWQPPFRLESASFQFCQMGPRFPAWLQSQKSIDSLDMSSTGLSGPLPS

NLPNLSEVVLFSNNISGRIPKSICQSQDLATLDLANNRLKLVFLDLGWNEFHGRLPVWIGDLVRLEVLALDHNKF

FGGIPDKITNISCLIHLNLAANNISGAMPRHLSNFTSMSGSINGCGDIPDNNSPSEKDNVSVVTKGKDLYYDDAE

ILDMVTIDLSSNYLTGDIPQEITSLLSLRCLNLSGNHLSGKIPNKIGILQSLESLDLSRNNLSGEIPSSLSNLTF

LSDLDLSFNNLRGTIPSGSQLDSLYTEHPRMFDGNGGLCGPPLGKNCYVPQKGHMRRKENFSKIQPFHVGILLGF

IAGLWVVFCIMLFKKSWRIAYFRLFDSMYDKVYVLVVVSWGKFAQENY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	210	234	4.4
LRR [Pfam ls]	388	411	2.3
LRR [Pfam ls]	453	476	5.4
LRR [Pfam ls]	477	500	0.1
LRR [Pfam fs]	501	524	1.6e-05
LRR [Pfam ls]	501	524	0.00025
LRR [Pfam ls]	525	547	2.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	210	234	0.19
LRR [sensitive, ls]	210	234	4.4
LRR [sensitive, ls]	235	269	1.6
LRR [sensitive, ls]	235	269	38
LRR [sensitive, ls]	283	303	0.8
LRR [sensitive, ls]	283	303	19
LRR [sensitive, ls]	304	327	0.77
LRR [sensitive, ls]	304	327	18
LRR [sensitive, ls]	340	363	0.47
LRR [sensitive, ls]	340	363	11
LRR [sensitive, ls]	364	387	0.41
LRR [sensitive, ls]	364	387	9.5
LRR [sensitive, ls]	388	411	0.097
LRR [sensitive, ls]	388	411	2.3
LRR [sensitive, ls]	453	476	0.23
LRR [sensitive, ls]	453	476	5.4
LRR [sensitive, ls]	477	500	0.0043
LRR [sensitive, ls]	477	500	0.1
LRR [sensitive, ls]	501	524	1.1e-05
LRR [sensitive, ls]	501	524	0.00025
LRR [sensitive, ls]	525	547	0.099
LRR [sensitive, ls]	525	547	2.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	176	542	6e-24
Xa21 [O. sativa]	205	542	3e-29
CLV2 [A. thaliana]	206	542	2e-29
Xa21 [O. sativa]	206	565	2e-30
FLS2 [A.thaliana]	211	543	5e-30
CLV2 [A. thaliana]	214	572	3e-27
FLS2 [A.thaliana]	222	612	2e-33
CLV2 [A. thaliana]	228	562	2e-27
Cf-9 [L. pimpinellifolium]	230	642	3e-37
FLS2 [A.thaliana]	269	541	5e-25
CLV2 [A. thaliana]	283	541	2e-17
CLV2 [A. thaliana]	292	542	4e-16
Xa21 [O. sativa]	348	549	1e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	591	613	out -> in

Report for 3886.m00151

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)