Report for 3908.m00145

 > 3908.m00145, length: 1997, copies: 1 

MAPTSVPLPSPPIRWLLLLLDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSGGLSEDIIQQRLQSVVHQRE

ELQRLEMELRAQVIAHPQIIEAQRSFEAAAKEHVTAAAKLKEQLHEREKYILELEMKLDDKDRELDALKIDHQTV

WANQDLLREQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHA

WMARVQEMDTLQSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQTAQE

SSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLLGIGGFVPSAQIAGMHSYMM

HPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLK

QNQATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQT

NEFKHLISKLYVHQDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSL

LPRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVASHPELFVIE

GDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKRGPVVDSRSSNVMPSRNGSTTASFG

DQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGLRGLH

TFPEDEQVACRSDHSYSKPEGIADYRASLFQQKCVFADKNKTARAEELSTKLQPNWWIPRHECTRQKIVELSVLH

RKTENASCCDCNAVQRNMAESLLLPVVRGVAGKAADALVQSVTRMCGIDGDRRKLERQLLAVQCKLADAEAKSET

NPAVKRWMKDLKAVAYEADDVLDDFEYEALRREVKIGDSTTRKVLGFFTPHSPLLFRVTMSRKLGDVLKKINELV

EEMNKFGLMEHVEVPQLPYRLTHSGLDESADIFGREHDKEVLVKLTLDQHDQQNLQVLPIVGMGGLGKTTLAKLI

YNDPSVQEHFQLKMWHCVSENFEVGSLLKSIVELATNRRCQLINTIELLRRQLEEAFGRRRFLLVLDDVWNDEEN

KWADDLKPLLNSVGGAGSVIVVTTRSQRVASIMGTLEPYELRCLNEDDSWEVFSKRAFGKQVQEQAKLVSIGTRI

VKKCRGVPLALKTMGGLMSSKQSVSEWEVIAESNIGARVQGKNDVMDILKLSYRHLSPEMKQCFAFCAIFPQDYE

MVKDELIQLWMANGFIQEEENMDLTHKGEMIFHDLVWRSFLQDVKEEFIIGYHCDSIVCKMHDLMHDLAKDVTDE

CASTTKELDQLKGSIKDVRHLRIPEEMEETMTELFKGTSSLHTLIDRSWRSTLWNVSVEFNLASVRALRCSVINS

AITNAKHIRFLDLSETSIVRLPDSICMLYNLQSLRLNSCDELEYLPKGCGIEELKDLQHLTNRLELYNLHKVKSE

EKAKQANMYQKKNLSEVLFFWGRQKRCMPNDNAYNEERVLESLAPYCSNLKVLELHGYGGVEIPEWMRDPHTFQR

ISKLNISNCPRCKDLPPVWLLVSLEELSLSCMDNLTTLCTNDDVEAEGCGTSLQIFPKLKKMFLRNLPNLERWAV

NISGDPSSFITLPQLEILRISDCPKLAGIPDCPVLRDLNIDRCSNIAVSSLAHVTSLSYLSYDAEGFDSMTMPLG

SWSSLMRLKVRSLANMVISLEDQQNQGESNLVNLRRLNLHGPKCFTTVSGFSELHHGIWVHFAFVEHLVIGDCHD

IVRWPTEELRCLIRLRSLHIFKFTSLGINFSLSEEILYLSCLEELNITSCSGIVEIPKLPASLEELFIQSCQNLV

VPLPPNLGNLASLRNFIVIKCESLKLLPDGMDGLTSLRKLHLDGCRG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	1066	1371	4.5e-82
NB-ARC [Pfam ls]	1066	1371	1.3e-82
LRR [Pfam ls]	1739	1761	1.9
LRR [Pfam ls]	1916	1939	6.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	1507	1529	0.62
LRR [sensitive, ls]	1507	1529	17
LRR [sensitive, ls]	1530	1558	0.32
LRR [sensitive, ls]	1530	1558	8.4
LRR [sensitive, ls]	1650	1672	0.95
LRR [sensitive, ls]	1650	1672	25
LRR [sensitive, ls]	1673	1710	2.9
LRR [sensitive, ls]	1673	1710	77
LRR [sensitive, ls]	1739	1761	0.071
LRR [sensitive, ls]	1739	1761	1.9
LRR [sensitive, ls]	1833	1855	2.2
LRR [sensitive, ls]	1833	1855	59
LRR [sensitive, ls]	1916	1939	0.24
LRR [sensitive, ls]	1916	1939	6.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	932	1560	1e-49
I2 [L. esculentum]	953	1957	1e-110
Mla1 [Hordeum vulgare].	980	1546	2e-41
Pib [Oryza sativa].	1072	1560	3e-33
Pi-ta [Oryza sativa]	1075	1538	3e-18
M [L. usitatissimum]	1078	1422	1e-16
Xa1 [Oryza sativa]	1082	1995	5e-71
L6 [L. usitatissimum]	1086	1996	2e-21
RPP5 [A. thaliana]	1101	1997	3e-18
RPS2 [A. thaliana]	1101	1755	7e-39
N [N. glutinosa]	1105	1943	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	123	148
putative coiled-coil	192	213
putative coiled-coil	951	975

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 3908.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)